Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30543
         (586 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C) ribo...   112   1e-25
At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) simi...   112   1e-25
At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A)           112   1e-25
At5g53640.1 68418.m06663 F-box family protein contains F-box dom...    28   5.3  
At3g56410.2 68416.m06274 expressed protein                             28   5.3  
At3g56410.1 68416.m06273 expressed protein                             28   5.3  
At1g64180.1 68414.m07270 intracellular protein transport protein...    27   7.0  
At1g52780.1 68414.m05966 expressed protein                             27   7.0  

>At3g52580.1 68416.m05790 40S ribosomal protein S14 (RPS14C)
           ribosomal protein S14 -Zea mays,PIR2:A30097
          Length = 150

 Score =  112 bits (270), Expect = 1e-25
 Identities = 55/85 (64%), Positives = 62/85 (72%)
 Frame = +3

Query: 255 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 434
           KVKADRDE+SPYAAMLAAQDVA++CK LGITA+H+KLRA            AQ       
Sbjct: 60  KVKADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALA 119

Query: 435 XXXMKIGRIEDVTPVPSDSTRRKGG 509
              MKIGRIEDVTP+P+DSTRRKGG
Sbjct: 120 RSGMKIGRIEDVTPIPTDSTRRKGG 144



 Score = 85.0 bits (201), Expect = 3e-17
 Identities = 40/61 (65%), Positives = 47/61 (77%)
 Frame = +1

Query: 76  MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGI 255
           M+ RK K  K E  VTLGP    GE VFGV H+FASFNDTF+HVTDLSGRET+ R+TGG+
Sbjct: 1   MSKRKTKEPKVE-NVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGM 59

Query: 256 R 258
           +
Sbjct: 60  K 60


>At3g11510.1 68416.m01403 40S ribosomal protein S14 (RPS14B) similar
           to 40S ribosomal protein S14 GB:P19950 [Zea mays]
          Length = 150

 Score =  112 bits (270), Expect = 1e-25
 Identities = 55/85 (64%), Positives = 62/85 (72%)
 Frame = +3

Query: 255 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 434
           KVKADRDE+SPYAAMLAAQDVA++CK LGITA+H+KLRA            AQ       
Sbjct: 60  KVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALA 119

Query: 435 XXXMKIGRIEDVTPVPSDSTRRKGG 509
              MKIGRIEDVTP+P+DSTRRKGG
Sbjct: 120 RSGMKIGRIEDVTPIPTDSTRRKGG 144



 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 41/61 (67%), Positives = 47/61 (77%)
 Frame = +1

Query: 76  MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGI 255
           M+ RK K  K E  VTLGP    GE VFGV HIFASFNDTF+HVTDLSGRET+ R+TGG+
Sbjct: 1   MSKRKTKEPKVET-VTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGM 59

Query: 256 R 258
           +
Sbjct: 60  K 60


>At2g36160.1 68415.m04438 40S ribosomal protein S14 (RPS14A)
          Length = 150

 Score =  112 bits (270), Expect = 1e-25
 Identities = 55/85 (64%), Positives = 62/85 (72%)
 Frame = +3

Query: 255 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 434
           KVKADRDE+SPYAAMLAAQDVA++CK LGITA+H+KLRA            AQ       
Sbjct: 60  KVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALA 119

Query: 435 XXXMKIGRIEDVTPVPSDSTRRKGG 509
              MKIGRIEDVTP+P+DSTRRKGG
Sbjct: 120 RSGMKIGRIEDVTPIPTDSTRRKGG 144



 Score = 86.2 bits (204), Expect = 1e-17
 Identities = 41/61 (67%), Positives = 48/61 (78%)
 Frame = +1

Query: 76  MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGI 255
           M+ RK K  K +V VTLGP    GE VFGV HIFASFNDTF+HVTDLSGRET+ R+TGG+
Sbjct: 1   MSKRKTKEPKVDV-VTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGM 59

Query: 256 R 258
           +
Sbjct: 60  K 60


>At5g53640.1 68418.m06663 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 917

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 97  LCFFSGPWLSL*LESCQNLKEIWL 26
           LC +   WL   LESC NLK + L
Sbjct: 807 LCIYDLKWLPTFLESCPNLKSLIL 830


>At3g56410.2 68416.m06274 expressed protein
          Length = 1535

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +2

Query: 296  YVGGTGCSREMQNSWHNGLAHKAPCYWWKQNKDPWSWCSVCTSGSCSFKYEDW 454
            Y  G+ C  E +NSW   +   A     + N +P+ W S   +     +YE W
Sbjct: 1040 YPEGSRC--ESENSWAETMGDGAGLKLEEYNSNPFEWTSEKAAAFHLHEYERW 1090


>At3g56410.1 68416.m06273 expressed protein
          Length = 1488

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +2

Query: 296  YVGGTGCSREMQNSWHNGLAHKAPCYWWKQNKDPWSWCSVCTSGSCSFKYEDW 454
            Y  G+ C  E +NSW   +   A     + N +P+ W S   +     +YE W
Sbjct: 993  YPEGSRC--ESENSWAETMGDGAGLKLEEYNSNPFEWTSEKAAAFHLHEYERW 1043


>At1g64180.1 68414.m07270 intracellular protein transport protein
           USO1-related similar to Rap8 (GI:2326183) [Rhynchosciara
           americana]; contains weak similarity to
           Swiss-Prot:P25386 intracellular protein transport
           protein USO1 [Saccharomyces cerevisiae]
          Length = 593

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 555 H*NLT*KADYSLRPLRHPSYGSSLMVRG 472
           H +LT + D++L+P+   SY SSL  RG
Sbjct: 147 HHHLTERNDHALQPVSPTSYDSSLEFRG 174


>At1g52780.1 68414.m05966 expressed protein 
          Length = 1059

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 237 PCHWWHKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKL 365
           P   +  +   RDE++P  +     DV +KCK++  +A  +KL
Sbjct: 32  PVPMFESIGEHRDESAPKISYDRINDVKKKCKSVLSSASELKL 74


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,736,784
Number of Sequences: 28952
Number of extensions: 267223
Number of successful extensions: 659
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)