Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30542
         (802 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    27   0.13 
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    27   0.13 
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    26   0.30 
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   2.1  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   3.7  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    22   5.0  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    22   5.0  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   8.7  

>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 669 WDQYWKLESPVQFLIFLPNWLGNTVPFSTRLK 764
           WD +W  E  V  ++    WLG   P S +LK
Sbjct: 311 WDYFWDDEQQVPHIVKGNQWLGFDDPKSIQLK 342


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 669 WDQYWKLESPVQFLIFLPNWLGNTVPFSTRLK 764
           WD +W  E  V  ++    WLG   P S +LK
Sbjct: 311 WDYFWDDEQQVPHIVKGNQWLGFDDPKSIQLK 342


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 669 WDQYWKLESPVQFLIFLPNWLGNTVPFSTRLK 764
           WD +W  E  V  ++    WLG   P S ++K
Sbjct: 310 WDYFWDDEQQVPHIVKGNQWLGFDDPKSIQVK 341


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 798 P*NPKFFHPWFFLTGWK 748
           P NP FFHP      W+
Sbjct: 51  PTNPAFFHPGLLPLAWQ 67


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 480 RSVGAGQLQRCFGFKLSDALLISSYLFLIYEHTS 379
           RS+G   L+  F FKL   + I ++L  + E T+
Sbjct: 372 RSIGLKCLEHLFFFKLIGDVPIDTFLMEMLEGTT 405


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 60  FIFLQRYKEAMEVSCIFCSI*INKNIVT*NRIVKIFERFKIF 185
           +I L    EA   S I+  + I KN+   N  V IF+   +F
Sbjct: 118 WIILCNIFEAAAKSLIYIDMIIKKNVTQQNSDVFIFDNVWLF 159


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 629 YKIFQENFS*NVGLGPVLEIRVA 697
           Y IFQ+NF+  V L  +LE + A
Sbjct: 78  YAIFQKNFTNIVNLTHLLETQYA 100


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 464 PAPTLRRQRCGRLKNTE 514
           P  T    RCG+L NTE
Sbjct: 293 PRTTPASSRCGQLFNTE 309


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,066
Number of Sequences: 336
Number of extensions: 3431
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)