Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30542
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    27   3.1  
SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit Sen34|Sc...    26   7.2  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    26   7.2  

>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 12  LEIFTIMYGMSCS-KIRFIFLQRYKEAMEVSC 104
           L +F+I+Y    S K+ F+F + YKE  E  C
Sbjct: 872 LPVFSIVYDRDVSEKLVFLFPELYKEMREQKC 903


>SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit
           Sen34|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 609 VCYTGCGIKFSRKILVKTLAWDQYWKLESPVQFLI 713
           V Y G  +++    LV +  WDQ    E PV FLI
Sbjct: 204 VAYPGDALRYHSHYLVNSYKWDQ----EIPVLFLI 234


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 663 LAWDQYWKLESPVQFLIFLPNWL 731
           LAW+ Y+ L +  + LI LPN L
Sbjct: 245 LAWNVYYALRAGCERLIILPNLL 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,948,082
Number of Sequences: 5004
Number of extensions: 55842
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)