Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30542
         (802 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0407 + 28715332-28715385,28715528-28715680,28715810-287158...    29   4.3  
05_05_0391 - 24617389-24617508,24617854-24617919,24618156-246182...    29   5.7  
07_03_0917 - 22574472-22574558,22574756-22574821,22574848-225748...    28   7.5  
08_01_0628 - 5460030-5462960                                           28   9.9  

>02_05_0407 +
           28715332-28715385,28715528-28715680,28715810-28715872,
           28715988-28716021,28716157-28716279,28716400-28716462,
           28716655-28716748,28717049-28717094,28717180-28717247,
           28717360-28717408,28717593-28717658,28718876-28719074,
           28719344-28719386,28719719-28719923
          Length = 419

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = +2

Query: 416 MSNASESL-KPKQRCSWPAPTLRRQRCGRLKNTER*SRYCGLNNTEKNCPPLRVSTYTMI 592
           + N S+S  K K+   W A   RR+    ++  E   +  G+   EKN PP     +  I
Sbjct: 65  LDNMSDSKGKGKELLQWEADLKRRE--ADIRRREEALKSAGVPMEEKNWPPFFPIIHHDI 122

Query: 593 LNDSPCMLYRVWYKIF 640
            N+ P    ++ Y  F
Sbjct: 123 ANEIPANAQKLQYLAF 138


>05_05_0391 -
           24617389-24617508,24617854-24617919,24618156-24618204,
           24618855-24618922,24619041-24619086,24619187-24619280,
           24619373-24619435,24619722-24619844,24620370-24620403,
           24621106-24621168,24621447-24621545,24622398-24622454
          Length = 293

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 20/73 (27%), Positives = 32/73 (43%)
 Frame = +2

Query: 422 NASESLKPKQRCSWPAPTLRRQRCGRLKNTER*SRYCGLNNTEKNCPPLRVSTYTMILND 601
           ++S+ LK K++          +R   LK  E  +   G+   +KN PP     +  I N+
Sbjct: 49  DSSKDLKKKEKELQAMEAELNKRERELKRKEEAAAQAGIVIEDKNWPPFFPLIHHNISNE 108

Query: 602 SPCMLYRVWYKIF 640
            P  L R+ Y  F
Sbjct: 109 IPIHLQRMQYLAF 121


>07_03_0917 -
           22574472-22574558,22574756-22574821,22574848-22574886,
           22574978-22575026,22575492-22575559,22575650-22575695,
           22575773-22575866,22575956-22576018,22576436-22576558,
           22577143-22577176,22577489-22577551,22577678-22577785,
           22577914-22577976,22578322-22578378
          Length = 319

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 20/73 (27%), Positives = 32/73 (43%)
 Frame = +2

Query: 422 NASESLKPKQRCSWPAPTLRRQRCGRLKNTER*SRYCGLNNTEKNCPPLRVSTYTMILND 601
           ++S+ LK +++          +R   LK  E  +   G+   EKN PP     +  I N+
Sbjct: 73  DSSKDLKNREKELQAREAELNKREKELKRREEAAARAGIVIEEKNWPPFLPLIHHDITNE 132

Query: 602 SPCMLYRVWYKIF 640
            P  L R+ Y  F
Sbjct: 133 IPSHLQRMQYVAF 145


>08_01_0628 - 5460030-5462960
          Length = 976

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
 Frame = +1

Query: 166 LKDLKYLNKRQL----VPH*L*RIRYISSSDTKWHLET*TIDNIKKMTTLFH--TLKRH 324
           L++L+YL  R      +P  L +++ + + DTKW +      ++ K+ +L H   LKRH
Sbjct: 638 LRNLRYLGIRSTFIEELPKDLGKLQKLQTLDTKWSMVQKLPSSLSKLKSLRHLILLKRH 696


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,793,949
Number of Sequences: 37544
Number of extensions: 323543
Number of successful extensions: 655
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)