Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30542
         (802 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49789| Best HMM Match : IncA (HMM E-Value=0.47)                     29   4.4  
SB_27385| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_2076| Best HMM Match : Sushi (HMM E-Value=1.4)                      28   7.7  

>SB_49789| Best HMM Match : IncA (HMM E-Value=0.47)
          Length = 674

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 796 IKPQILSPLVFFNRVENGTVLPSQLGKKIKNWTGDSNFQYWSQA 665
           I P++ +  VF + +   ++L  +  K+   W   SN  YWSQA
Sbjct: 286 ITPKVKTHFVFRD-IFTDSLLVFRTAKEASRWLDASNLSYWSQA 328


>SB_27385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 456

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 796 IKPQILSPLVFFNRVENGTVLPSQLGKKIKNWTGDSNFQYWSQA 665
           I P++ +  VF + +   ++L  +  K+   W   SN  YWSQA
Sbjct: 286 ITPKVKTHFVFRD-IFTDSLLVFRTAKEASRWLDASNLSYWSQA 328


>SB_2076| Best HMM Match : Sushi (HMM E-Value=1.4)
          Length = 197

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 527 YCGLNNTEKNCPPLRVSTYTMILND 601
           YCG  +   N PP R+ ++  ++ND
Sbjct: 147 YCGERSKRSNDPPQRIISFDFVIND 171


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,247,904
Number of Sequences: 59808
Number of extensions: 384081
Number of successful extensions: 1007
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)