Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30542
         (802 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81027-2|CAB02687.1|  282|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AF063007-1|AAC16430.2|  730|Caenorhabditis elegans Hypothetical ...    29   3.9  
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr...    29   5.1  
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p...    29   5.1  
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like...    29   5.1  
Z68114-8|CAA92162.1|  317|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>Z81027-2|CAB02687.1|  282|Caenorhabditis elegans Hypothetical
           protein AH10.3 protein.
          Length = 282

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -1

Query: 715 KIKNWTGDSNFQYWSQANVLTKIFLENFIPHPV*HTG*IIKNHCV 581
           K+ +     + QYWS+  +L  IF ENF        G I+  HCV
Sbjct: 109 KVSSIFNRKHLQYWSKKCLLELIFFENFARLSNFPIGYILCQHCV 153


>AF063007-1|AAC16430.2|  730|Caenorhabditis elegans Hypothetical
           protein R119.1 protein.
          Length = 730

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -1

Query: 751 ENGTVLPSQLGKKIKNWTGDSNFQYWSQANVLTKIFLENFI 629
           EN  ++PS+L KK +         Y S  NVLTKI   NF+
Sbjct: 370 ENFCMVPSKLYKKFQERKTKFEEIYASMINVLTKINESNFV 410


>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
            F15B9.7 protein.
          Length = 2577

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 509  TER*SRYCGLNNTEKNCPPLRVSTYTMILNDSPCMLYRV 625
            T R +   GLN T   C   R+  +TM +ND    + RV
Sbjct: 2166 TARGAALIGLNLTHAACEYNRIGVFTMFVNDQSSSIVRV 2204


>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
            protein F15B9.7 protein.
          Length = 2577

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 509  TER*SRYCGLNNTEKNCPPLRVSTYTMILNDSPCMLYRV 625
            T R +   GLN T   C   R+  +TM +ND    + RV
Sbjct: 2166 TARGAALIGLNLTHAACEYNRIGVFTMFVNDQSSSIVRV 2204


>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
            protein FMI-1 protein.
          Length = 2596

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 509  TER*SRYCGLNNTEKNCPPLRVSTYTMILNDSPCMLYRV 625
            T R +   GLN T   C   R+  +TM +ND    + RV
Sbjct: 2185 TARGAALIGLNLTHAACEYNRIGVFTMFVNDQSSSIVRV 2223


>Z68114-8|CAA92162.1|  317|Caenorhabditis elegans Hypothetical
           protein F17A2.11 protein.
          Length = 317

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -2

Query: 789 PKFFHPWFFLTGWKTVPYYQ--ANWVKKLKIGPATLISS 679
           P FF P  ++T +   PY +    W+ K K GP  +ISS
Sbjct: 277 PTFFDP--YITLYSVAPYRKQIGMWLGKAKTGPMIVISS 313


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,104,593
Number of Sequences: 27780
Number of extensions: 316837
Number of successful extensions: 598
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)