Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30542
         (802 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21120.1 68417.m03054 amino acid permease family protein simi...    31   0.67 
At3g55150.1 68416.m06125 exocyst subunit EXO70 family protein co...    31   1.2  
At2g32290.1 68415.m03947 beta-amylase, putative / 1,4-alpha-D-gl...    30   1.6  
At5g23610.1 68418.m02770 expressed protein                             29   3.6  

>At4g21120.1 68417.m03054 amino acid permease family protein similar
           to cationic amino acid transporter-1 [Rattus norvegicus]
           GI:1589917; contains Pfam profile PF00324: Amino acid
           permease
          Length = 594

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +3

Query: 648 ILVKTLAWDQYWKLESP--VQFLIFLPNWLGNTVPFSTRLKKTRGERIWG 791
           IL  + A   YW LE    + + I +P W  +TV     + + R  +IWG
Sbjct: 465 ILASSTATAVYWALEEEGWIGYCITVPIWFLSTVAMKFLVPQARAPKIWG 514


>At3g55150.1 68416.m06125 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit; tomato leucine zipper-containing protein,
           Lycopersicon esculentum, PIR:S21495
          Length = 636

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 768 FFLTGWKTVPYYQANWVKKLKIGPATL 688
           F  T W T+ +   NW+K  KIG ATL
Sbjct: 232 FHRTDWVTLEHMIKNWIKAAKIGIATL 258


>At2g32290.1 68415.m03947 beta-amylase, putative /
           1,4-alpha-D-glucan maltohydrolase, putative similar to
           beta-amylase GI:13560977 from [Castanea crenata]
          Length = 577

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +2

Query: 542 NTEKNCPPLRVSTYTMILNDSPCMLYRVWYKIFQENFS*NVGLGPVLEIRVA-GP 703
           N  K C  L V   ++    +   +YR + K F+EN    +  G +++I V  GP
Sbjct: 195 NRNKECLSLSVDNLSLFRGRTAVEMYRDYMKSFRENMEDFISSGVIIDIEVGLGP 249


>At5g23610.1 68418.m02770 expressed protein
          Length = 359

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 748 NGTVLPSQLGKKIKNWTGDSNFQYWSQANVLTKIFLENFIPHP 620
           +G V P    +  + +  D   QYW ++  L KI LE+ IP P
Sbjct: 39  DGKVTPGGSDRFRRCYNTDGCMQYWLESADLVKIKLESGIPDP 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,796,851
Number of Sequences: 28952
Number of extensions: 272890
Number of successful extensions: 489
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)