Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30539
(797 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep: ... 168 2e-40
UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203; Eukary... 163 5e-39
UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10; Culicim... 163 6e-39
UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila... 148 2e-34
UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5... 128 2e-28
UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S riboso... 124 3e-27
UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, wh... 118 2e-25
UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1; ... 117 3e-25
UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, wh... 109 6e-23
UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9; Trypanos... 106 6e-22
UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2; T... 100 4e-20
UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba hi... 100 5e-20
UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lambli... 93 7e-18
UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillard... 90 7e-17
UniRef50_A2A3R7 Cluster: Ribosomal protein S6; n=1; Homo sapiens... 80 7e-14
UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1; Encephal... 65 2e-09
UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila melanogaster|... 53 7e-06
UniRef50_Q8U3H8 Cluster: 30S ribosomal protein S6e; n=4; Archaea... 50 7e-05
UniRef50_Q3LVW0 Cluster: Ribosomal protein S6; n=1; Bigelowiella... 50 9e-05
UniRef50_Q5JDK8 Cluster: 30S ribosomal protein S6e; n=1; Thermoc... 50 9e-05
UniRef50_UPI00015BAF12 Cluster: SSU ribosomal protein S6E; n=1; ... 45 0.002
UniRef50_Q2NGM7 Cluster: 30S ribosomal protein S6e; n=2; Methano... 43 0.008
UniRef50_Q01CM6 Cluster: Chromosome 03 contig 1, DNA sequence; n... 41 0.041
UniRef50_Q6LXY7 Cluster: 30S ribosomal protein S6e; n=4; Archaea... 40 0.072
UniRef50_Q74MJ5 Cluster: 30S ribosomal protein S6e; n=1; Nanoarc... 40 0.096
UniRef50_Q9HMJ5 Cluster: 30S ribosomal protein S6e; n=6; Halobac... 40 0.096
UniRef50_A0RYX5 Cluster: Ribosomal protein S6E; n=1; Cenarchaeum... 39 0.13
UniRef50_O29739 Cluster: 30S ribosomal protein S6e; n=7; Euryarc... 39 0.13
UniRef50_UPI0000DC1AEC Cluster: UPI0000DC1AEC related cluster; n... 38 0.22
UniRef50_A7IAP8 Cluster: Ribosomal protein S6e; n=2; Candidatus ... 37 0.67
UniRef50_A7DQN0 Cluster: Ribosomal protein S6e; n=1; Candidatus ... 36 1.2
UniRef50_Q87BM0 Cluster: Putative uncharacterized protein; n=1; ... 36 1.6
UniRef50_Q980A6 Cluster: 30S ribosomal protein S6e; n=5; Sulfolo... 35 2.1
UniRef50_UPI0000DD81A8 Cluster: PREDICTED: SET domain containing... 35 2.7
UniRef50_A2BJZ7 Cluster: 30S ribosomal protein S6e; n=2; Desulfu... 34 4.8
UniRef50_A6L045 Cluster: Putative uncharacterized protein; n=1; ... 33 6.3
UniRef50_O86476 Cluster: Clumping factor B precursor; n=31; Stap... 33 6.3
UniRef50_UPI000155618C Cluster: PREDICTED: similar to poliovirus... 33 8.3
UniRef50_Q6N427 Cluster: Phytoene dehydrogenase-related protein;... 33 8.3
UniRef50_Q18YJ9 Cluster: DNA polymerase I; n=2; Desulfitobacteri... 33 8.3
>UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 245
Score = 168 bits (408), Expect = 2e-40
Identities = 90/152 (59%), Positives = 107/152 (70%), Gaps = 9/152 (5%)
Frame = +1
Query: 145 MEGLCTSCRWRQRQARIP---DETGRPDKQPCSSSD------VKGPSCYRPRRDGERKRK 297
+ G C W+ RI D+ G P KQ ++ KG SCYRPRR GERKRK
Sbjct: 36 VSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKRK 95
Query: 298 SVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRR 477
SVRGCIVD+ LSVL+LVIV+KG Q+IPGLTD +PRRLGPKR KIRK+FNLSKEDDVR+
Sbjct: 96 SVRGCIVDSQLSVLSLVIVKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVRQ 155
Query: 478 YVVKRVLPAKEEKKMLNPDIRAPKIQRLVHPL 573
YV++R LP KE KK + +APKIQRLV P+
Sbjct: 156 YVIRRPLPEKEGKKAKS---KAPKIQRLVTPV 184
Score = 136 bits (329), Expect = 6e-31
Identities = 58/80 (72%), Positives = 67/80 (83%)
Frame = +2
Query: 14 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 193
MKLN+SYP TGCQKL E+ DE K+R FY+KRM EV + LGDEWKGYV R+ GGNDKQG
Sbjct: 1 MKLNISYPVTGCQKLIEIEDERKVRSFYDKRMAMEVSGECLGDEWKGYVFRITGGNDKQG 60
Query: 194 FPMKQGVLTNSRVRLLMSKG 253
FPMKQG++TN RVRLL+SKG
Sbjct: 61 FPMKQGIMTNGRVRLLLSKG 80
>UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203;
Eukaryota|Rep: 40S ribosomal protein S6 - Homo sapiens
(Human)
Length = 249
Score = 163 bits (396), Expect = 5e-39
Identities = 84/108 (77%), Positives = 92/108 (85%)
Frame = +1
Query: 247 KGPSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRA 426
KG SCYRPRR GERKRKSVRGCIVDANLSVL LVIV+KG ++IPGLTD VPRRLGPKRA
Sbjct: 79 KGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRA 138
Query: 427 SKIRKLFNLSKEDDVRRYVVKRVLPAKEEKKMLNPDIRAPKIQRLVHP 570
S+IRKLFNLSKEDDVR+YVV++ L KE KK P +APKIQRLV P
Sbjct: 139 SRIRKLFNLSKEDDVRQYVVRKPL-NKEGKK---PRTKAPKIQRLVTP 182
Score = 141 bits (342), Expect = 2e-32
Identities = 63/80 (78%), Positives = 71/80 (88%)
Frame = +2
Query: 14 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 193
MKLN+S+PATGCQKL EV DE KLR FYEKRM EV AD LG+EWKGYV+R++GGNDKQG
Sbjct: 1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQG 60
Query: 194 FPMKQGVLTNSRVRLLMSKG 253
FPMKQGVLT+ RVRLL+SKG
Sbjct: 61 FPMKQGVLTHGRVRLLLSKG 80
>UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10;
Culicimorpha|Rep: 40S ribosomal protein S6 - Aedes
albopictus (Forest day mosquito)
Length = 349
Score = 163 bits (395), Expect = 6e-39
Identities = 79/109 (72%), Positives = 91/109 (83%)
Frame = +1
Query: 247 KGPSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRA 426
KG SCYRPRR GERKRKSVRGCIVD NLS LAL++V+KG ++IPGLTD V RRLGPKRA
Sbjct: 79 KGHSCYRPRRTGERKRKSVRGCIVDQNLSALALIVVKKGEKDIPGLTDTTVLRRLGPKRA 138
Query: 427 SKIRKLFNLSKEDDVRRYVVKRVLPAKEEKKMLNPDIRAPKIQRLVHPL 573
S IRKL+NL+KEDDVR+YVVKR LP K+ KK P +APKIQRL+ P+
Sbjct: 139 SNIRKLYNLTKEDDVRQYVVKRPLPEKDGKK---PRTKAPKIQRLITPV 184
Score = 146 bits (354), Expect = 6e-34
Identities = 64/80 (80%), Positives = 73/80 (91%)
Frame = +2
Query: 14 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 193
MKLNVS+PATG QK FEV+D+HKLR FY+KRMGAE+ AD LGDEWKGYV ++AGGNDKQG
Sbjct: 1 MKLNVSFPATGAQKTFEVMDDHKLRHFYDKRMGAEITADHLGDEWKGYVFKIAGGNDKQG 60
Query: 194 FPMKQGVLTNSRVRLLMSKG 253
FPMKQGVLTN+RVRLL+ KG
Sbjct: 61 FPMKQGVLTNTRVRLLLKKG 80
>UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila
melanogaster|Rep: Isoform B of P29327 - Drosophila
melanogaster (Fruit fly)
Length = 200
Score = 148 bits (358), Expect = 2e-34
Identities = 67/76 (88%), Positives = 71/76 (93%)
Frame = +2
Query: 14 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 193
MKLNVSYPATGCQKLFEVVDEHKLR+FYEKRMG VEAD LGDEWKGY LR+AGGNDKQG
Sbjct: 1 MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60
Query: 194 FPMKQGVLTNSRVRLL 241
FPMKQGVLT+ R+RLL
Sbjct: 61 FPMKQGVLTHGRLRLL 76
Score = 53.6 bits (123), Expect = 5e-06
Identities = 45/127 (35%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Frame = +1
Query: 172 WRQRQARIP---DETGRPDKQPCSSSD-----VKGPSCYRPRRDGERKRKSVRGCIVDAN 327
W+ Q RI D+ G P KQ + K SC+ PR + RK K+VR V+AN
Sbjct: 45 WKGYQLRIAGGNDKQGFPMKQGVLTHGRLRLLKKIHSCFHPRCNKVRKCKTVRKYTVEAN 104
Query: 328 LSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAK 507
+S L LV+++K P RLGP R+S I K++ L +EDD V+ L +
Sbjct: 105 VSALTLVVLKKNPS----------PCRLGPVRSSNISKIYYLCEEDD---EVIPVKLQRR 151
Query: 508 EEKKMLN 528
+KK N
Sbjct: 152 HQKKRQN 158
>UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5;
Plasmodium|Rep: 40S ribosomal protein S6, putative -
Plasmodium vivax
Length = 391
Score = 128 bits (308), Expect = 2e-28
Identities = 62/106 (58%), Positives = 77/106 (72%)
Frame = +1
Query: 247 KGPSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRA 426
KG CYRPR+ GE++RKSVRGCIV +LS L L +V+KG EIPGLTD V ++LGPKRA
Sbjct: 120 KGMKCYRPRKKGEKRRKSVRGCIVGQDLSALNLTLVKKGTNEIPGLTDKAVGKKLGPKRA 179
Query: 427 SKIRKLFNLSKEDDVRRYVVKRVLPAKEEKKMLNPDIRAPKIQRLV 564
+KIRKLFNL K DDVR+YV+ R + + + + PKIQRLV
Sbjct: 180 TKIRKLFNLDKTDDVRKYVIGRAISKNGKNRFIK-----PKIQRLV 220
Score = 104 bits (249), Expect = 3e-21
Identities = 49/80 (61%), Positives = 57/80 (71%)
Frame = +2
Query: 14 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 193
MKLN+S P QK E+ DE KL F EKR+G V D +G+E+ GYV R+ GGNDKQG
Sbjct: 42 MKLNISNPLNNVQKSIEIDDEKKLLPFMEKRIGNVVPGDSIGEEFLGYVFRITGGNDKQG 101
Query: 194 FPMKQGVLTNSRVRLLMSKG 253
FPM QGVLTN+RVRLL KG
Sbjct: 102 FPMMQGVLTNNRVRLLFKKG 121
>UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S ribosomal
protein S6; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S6 - Canis familiaris
Length = 154
Score = 124 bits (298), Expect = 3e-27
Identities = 56/87 (64%), Positives = 69/87 (79%), Gaps = 2/87 (2%)
Frame = +2
Query: 14 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 193
MKLN+S+PATGCQKL E DE K R FYEK M +EV AD LG+EWKGY++R++GGNDKQG
Sbjct: 1 MKLNISFPATGCQKLIEADDERKPRTFYEKHMASEVAADALGEEWKGYMVRISGGNDKQG 60
Query: 194 FPMKQGVLTNSRVRLLMSKG--PHVTD 268
FPMKQ VLT+ R+ LL+ + P +TD
Sbjct: 61 FPMKQDVLTHDRIHLLLREKDIPGLTD 87
Score = 62.9 bits (146), Expect = 9e-09
Identities = 32/60 (53%), Positives = 43/60 (71%), Gaps = 9/60 (15%)
Frame = +1
Query: 367 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDD---------VRRYVVKRVLPAKEEKK 519
++IPGLTD PR +GPKRAS+IRKLFNLSKEDD +R+ + KR+ AKE+++
Sbjct: 80 KDIPGLTDTTEPRHVGPKRASRIRKLFNLSKEDDAAQNSILRKIRKRIYKRMKEAKEKRQ 139
>UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, whole
genome shotgun sequence; n=6; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_28,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 315
Score = 118 bits (284), Expect = 2e-25
Identities = 52/80 (65%), Positives = 63/80 (78%)
Frame = +2
Query: 14 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 193
MK N+SYP TG QK E+ D+ K IF++KRMG VEAD LG+E+KGYVL++ GGNDKQG
Sbjct: 1 MKFNISYPLTGAQKTVEIDDDKKCSIFFDKRMGQVVEADNLGEEYKGYVLKITGGNDKQG 60
Query: 194 FPMKQGVLTNSRVRLLMSKG 253
FPM+QGVL RVR+LM KG
Sbjct: 61 FPMRQGVLFKGRVRILMRKG 80
Score = 118 bits (283), Expect = 2e-25
Identities = 61/109 (55%), Positives = 77/109 (70%), Gaps = 3/109 (2%)
Frame = +1
Query: 247 KGPSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRA 426
KG YRPR+DGE KRKS+RGCIV ++ VLAL +V+KGA EI GLTD NVPRRLGPKR
Sbjct: 79 KGHKGYRPRKDGEMKRKSIRGCIVGQDIRVLALQVVKKGANEIAGLTDQNVPRRLGPKRL 138
Query: 427 SKIRKLFNLSKEDD---VRRYVVKRVLPAKEEKKMLNPDIRAPKIQRLV 564
+K+R+LF K D V++ +++R K+ KK +APKIQRLV
Sbjct: 139 TKLRRLFGFKKADGVAIVQKNLIRRTWTTKDGKKRQ----KAPKIQRLV 183
>UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 293
Score = 117 bits (282), Expect = 3e-25
Identities = 51/80 (63%), Positives = 62/80 (77%)
Frame = +2
Query: 14 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 193
MK N+SYP TG QK E+ D+ K IF +K+MG EVE D LGDE+KGYV ++AGGNDK G
Sbjct: 1 MKFNISYPLTGAQKCIEIDDDKKCNIFMDKKMGQEVEGDTLGDEFKGYVFKIAGGNDKDG 60
Query: 194 FPMKQGVLTNSRVRLLMSKG 253
FPMKQGV+ RVRLL+S+G
Sbjct: 61 FPMKQGVMVRGRVRLLLSEG 80
Score = 109 bits (261), Expect = 1e-22
Identities = 57/111 (51%), Positives = 74/111 (66%), Gaps = 3/111 (2%)
Frame = +1
Query: 247 KGPSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRA 426
+G SC+ RR G RKRKSVRGCIV ++ VLAL IV+KG EI GLT +PR+LGPKRA
Sbjct: 79 EGHSCFTSRRSGFRKRKSVRGCIVGPDMRVLALQIVKKGVAEIDGLTTVTLPRKLGPKRA 138
Query: 427 SKIRKLFNLSKEDD---VRRYVVKRVLPAKEEKKMLNPDIRAPKIQRLVHP 570
+ I+KLF L KEDD +++ V++R + K + PKIQRL+ P
Sbjct: 139 NNIKKLFGLKKEDDPILIKKSVIRRTFKTAKGKDR----TKCPKIQRLITP 185
>UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_48,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 304
Score = 109 bits (263), Expect = 6e-23
Identities = 60/106 (56%), Positives = 72/106 (67%)
Frame = +1
Query: 247 KGPSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRA 426
KG YRPR+DGE KRKS+RGCIV ++ VLAL +V+KGA EI GLTD NVPRRLGPKR
Sbjct: 84 KGHKGYRPRKDGEMKRKSIRGCIVGQDIRVLALQVVKKGANEIAGLTDQNVPRRLGPKRL 143
Query: 427 SKIRKLFNLSKEDDVRRYVVKRVLPAKEEKKMLNPDIRAPKIQRLV 564
+K+R+LF K D R + P + KK +APKIQRLV
Sbjct: 144 TKLRRLFGFKKAD--RVISSEEHGPQRYGKKRQ----KAPKIQRLV 183
>UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9;
Trypanosomatidae|Rep: 40S ribosomal protein S6 -
Leishmania major
Length = 249
Score = 106 bits (255), Expect = 6e-22
Identities = 53/97 (54%), Positives = 74/97 (76%)
Frame = +1
Query: 280 GERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSK 459
GER+RK+VRGC++ ++++++ + I + G Q I G+TD PRRLGPKRASKIRKLFNLS+
Sbjct: 93 GERRRKNVRGCVLASDIALVNVTISKVGDQPIEGVTDTTAPRRLGPKRASKIRKLFNLSR 152
Query: 460 EDDVRRYVVKRVLPAKEEKKMLNPDIRAPKIQRLVHP 570
+DVR+YVV+R + K KK ++APKIQRL+ P
Sbjct: 153 TEDVRKYVVRRRV-VKSGKK---DRLKAPKIQRLITP 185
Score = 84.2 bits (199), Expect = 3e-15
Identities = 40/81 (49%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Frame = +2
Query: 14 MKLNVSYPATGCQKLFEVVDEHKLRI-FYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 190
MKLN++YP G K FE+ DE R+ + R+G EV+ G E+KGY+ R+ GG+DK
Sbjct: 1 MKLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKD 60
Query: 191 GFPMKQGVLTNSRVRLLMSKG 253
GFPM GVL +SRV LL+ +G
Sbjct: 61 GFPMVPGVLASSRVSLLVKRG 81
>UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2;
Trichomonas vaginalis G3|Rep: Ribosomal protein S6e,
putative - Trichomonas vaginalis G3
Length = 216
Score = 100 bits (240), Expect = 4e-20
Identities = 53/107 (49%), Positives = 71/107 (66%), Gaps = 2/107 (1%)
Frame = +1
Query: 250 GPSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRAS 429
G SCYRPR+DGERKRK+VRGCI+ +S L V+++KG +EI GLT VPRR GPKRAS
Sbjct: 80 GASCYRPRKDGERKRKTVRGCIISDEISALHCVVLQKGEKEIDGLTTTAVPRRFGPKRAS 139
Query: 430 KIRKLFNLS-KEDDVRRYVVKR-VLPAKEEKKMLNPDIRAPKIQRLV 564
+R +F ++ + D + V+KR V P K +PK+QRL+
Sbjct: 140 TLRAMFGITDSKFDASKLVLKREVKPGK---------FTSPKVQRLI 177
Score = 92.7 bits (220), Expect = 1e-17
Identities = 38/80 (47%), Positives = 57/80 (71%)
Frame = +2
Query: 14 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 193
M++ ++YP G Q + ++ D L YEKR+G ++E ++LG ++KGY+ R+ GG DKQG
Sbjct: 1 MRITLAYPENGTQVVVDIDDPAALNALYEKRVGQDIEGEKLGGQFKGYLFRIGGGFDKQG 60
Query: 194 FPMKQGVLTNSRVRLLMSKG 253
FPMKQGV+T R+RLL+ G
Sbjct: 61 FPMKQGVITPRRIRLLLKTG 80
>UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba
histolytica|Rep: Ribosomal protein S6 - Entamoeba
histolytica
Length = 162
Score = 100 bits (239), Expect = 5e-20
Identities = 43/78 (55%), Positives = 63/78 (80%)
Frame = +1
Query: 259 CYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIR 438
CY+P R+GER+RK+VRG IV ++SVL ++V+KG EI G+T+ +P R GP+RAS R
Sbjct: 82 CYKPLRNGERRRKTVRGAIVAGDISVLNTIVVKKGEGEIEGVTNDALPMRAGPQRASHFR 141
Query: 439 KLFNLSKEDDVRRYVVKR 492
KLFNLS++DDV+++V++R
Sbjct: 142 KLFNLSQKDDVKKFVIRR 159
Score = 97.9 bits (233), Expect = 3e-19
Identities = 44/76 (57%), Positives = 57/76 (75%)
Frame = +2
Query: 17 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGF 196
K+NV+YPATG K F+ +E R F +KR+G EV+A LGDE+KGY+L++ GG DK GF
Sbjct: 1 KINVAYPATGRIKKFDFEEEKNYRPFLDKRIGQEVDASSLGDEFKGYILKITGGCDKDGF 60
Query: 197 PMKQGVLTNSRVRLLM 244
PM GV TN+RVRLL+
Sbjct: 61 PMMTGVATNNRVRLLL 76
>UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_64_20707_19961 - Giardia lamblia
ATCC 50803
Length = 248
Score = 93.1 bits (221), Expect = 7e-18
Identities = 52/111 (46%), Positives = 74/111 (66%), Gaps = 5/111 (4%)
Frame = +1
Query: 247 KGPSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRA 426
+G CY RR+GERKRKS+RGCIV +L L++V+V G + +PGLTD VP+RL PKRA
Sbjct: 85 QGAKCYLHRRNGERKRKSIRGCIVGPDLHALSVVLVDAGDKTLPGLTDVVVPKRLVPKRA 144
Query: 427 SKIRKLFNL--SKEDDVRRYVV-KRVLPAKEEKKMLNPD--IRAPKIQRLV 564
SKIR+LF L +K D + +V + + E + N + ++ PK+QR+V
Sbjct: 145 SKIRRLFGLPTTKVDPKDQMLVCELIKELGHEVTLKNGEKKLKYPKVQRVV 195
Score = 76.6 bits (180), Expect = 7e-13
Identities = 35/79 (44%), Positives = 48/79 (60%)
Frame = +2
Query: 17 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGF 196
K+N+S P TG K + D K + + RM +E + LG+E+ G R+ GGND QGF
Sbjct: 8 KVNISNPVTGANKSLMIEDFRKSQTIHGLRMASEFDGAALGEEYAGCTFRITGGNDAQGF 67
Query: 197 PMKQGVLTNSRVRLLMSKG 253
PM QGVL + R RLL+ +G
Sbjct: 68 PMYQGVLKSQRARLLLRQG 86
>UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillardia
theta|Rep: 40S ribosomal protein S6 - Guillardia theta
(Cryptomonas phi)
Length = 209
Score = 89.8 bits (213), Expect = 7e-17
Identities = 37/80 (46%), Positives = 56/80 (70%)
Frame = +2
Query: 14 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 193
MK N++ P+TG Q E+ DE KLRI Y K++ ++++ +G EW + + GG DKQG
Sbjct: 1 MKFNIANPSTGVQHTIEIDDEDKLRILYGKKLTSKIDGKIIGKEWDKSIFIITGGQDKQG 60
Query: 194 FPMKQGVLTNSRVRLLMSKG 253
FPMK+G+L+ SRV++L+ KG
Sbjct: 61 FPMKEGILSPSRVKILLKKG 80
Score = 60.1 bits (139), Expect = 6e-08
Identities = 38/100 (38%), Positives = 60/100 (60%)
Frame = +1
Query: 274 RDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNL 453
+ GER RKSVRGCIV +SVL + ++ ++ +T+ N + L KR+S +RK+ L
Sbjct: 90 KKGERCRKSVRGCIVSPEISVLNIKLLTNKNDDLL-ITNKNSEKTLTHKRSSNLRKVLCL 148
Query: 454 SKEDDVRRYVVKRVLPAKEEKKMLNPDIRAPKIQRLVHPL 573
+K DD+R++ +K AK+ K + KIQRL+ P+
Sbjct: 149 TKTDDIRKHYIK---IAKDFKNKV-------KIQRLITPI 178
>UniRef50_A2A3R7 Cluster: Ribosomal protein S6; n=1; Homo
sapiens|Rep: Ribosomal protein S6 - Homo sapiens (Human)
Length = 91
Score = 79.8 bits (188), Expect = 7e-14
Identities = 35/46 (76%), Positives = 38/46 (82%)
Frame = +2
Query: 14 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWK 151
MKLN+S+PATGCQKL EV DE KLR FYEKRM EV AD LG+EWK
Sbjct: 1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWK 46
>UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S6 -
Encephalitozoon cuniculi
Length = 203
Score = 65.3 bits (152), Expect = 2e-09
Identities = 37/98 (37%), Positives = 56/98 (57%)
Frame = +1
Query: 247 KGPSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRA 426
KG + YR RR G R+RKSVRG IV + VL L+I+R G +EI GLT+ P++
Sbjct: 64 KGDAGYRCRRKGVRRRKSVRGSIVSEEICVLNLIILRPGEKEIDGLTNAVNDVSHLPRKE 123
Query: 427 SKIRKLFNLSKEDDVRRYVVKRVLPAKEEKKMLNPDIR 540
K+RK+F + E+ ++ +L ++ + P IR
Sbjct: 124 KKLRKMFGVPDEEKNVVGYIRNILKSECDDPKKIPKIR 161
Score = 64.5 bits (150), Expect = 3e-09
Identities = 28/66 (42%), Positives = 47/66 (71%)
Frame = +2
Query: 56 LFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVR 235
+FE+ +++R+ Y+K++G + + LG+E++G ++ + GG+D QGFPM G LT RVR
Sbjct: 1 MFEIERRNEVRL-YDKKIGDQFDGGILGEEFEGTIMEITGGDDYQGFPMVSGHLTKKRVR 59
Query: 236 LLMSKG 253
L+SKG
Sbjct: 60 PLLSKG 65
>UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila
melanogaster|Rep: IP07914p - Drosophila melanogaster
(Fruit fly)
Length = 147
Score = 53.2 bits (122), Expect = 7e-06
Identities = 35/91 (38%), Positives = 50/91 (54%)
Frame = +1
Query: 256 SCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKI 435
SC+ PR + RK K+VR V+AN+S L LV+++K P RLGP R+S I
Sbjct: 28 SCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKKNPS----------PCRLGPVRSSNI 77
Query: 436 RKLFNLSKEDDVRRYVVKRVLPAKEEKKMLN 528
K++ L +EDD V+ L + +KK N
Sbjct: 78 SKIYYLCEEDD---EVIPVKLQRRHQKKRQN 105
>UniRef50_Q8U3H8 Cluster: 30S ribosomal protein S6e; n=4;
Archaea|Rep: 30S ribosomal protein S6e - Pyrococcus
furiosus
Length = 125
Score = 50.0 bits (114), Expect = 7e-05
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Frame = +2
Query: 8 AVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQL--------GDEWKGYV- 160
A KL +S P +G K E+ ++ KR+G ++ A +L G E+ V
Sbjct: 2 ATFKLVISDPKSGIAKQVEITGAETEKLI-GKRIGDQIPAKELNINLNELFGKEFPEDVK 60
Query: 161 LRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGPHVTDRAAMER 286
L + GG DK GFPM+ + RVR+L+SKGP + ER
Sbjct: 61 LEIRGGTDKDGFPMRPDIHGPRRVRVLLSKGPGFRPKEKGER 102
>UniRef50_Q3LVW0 Cluster: Ribosomal protein S6; n=1; Bigelowiella
natans|Rep: Ribosomal protein S6 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 239
Score = 49.6 bits (113), Expect = 9e-05
Identities = 29/96 (30%), Positives = 54/96 (56%)
Frame = +2
Query: 14 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 193
MK+N++ P G Q + DE I K +G +E LG+++ + GG+DKQG
Sbjct: 1 MKINIADPILGTQYSIKRDDEFIEHIIGRK-IGDTIEGSILGEDFSRNEFLINGGHDKQG 59
Query: 194 FPMKQGVLTNSRVRLLMSKGPHVTDRAAMERENVNQ 301
F +K+ + T R+++ + KG + +R+ +R+N+ +
Sbjct: 60 FLLKKNLNTFERLKINVKKG-SLGNRSHFKRKNLTK 94
>UniRef50_Q5JDK8 Cluster: 30S ribosomal protein S6e; n=1;
Thermococcus kodakarensis KOD1|Rep: 30S ribosomal
protein S6e - Pyrococcus kodakaraensis (Thermococcus
kodakaraensis)
Length = 125
Score = 49.6 bits (113), Expect = 9e-05
Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Frame = +2
Query: 8 AVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLG---DEWKGYV------ 160
A KL +S P G K E+ ++ +R+G E+ A +LG E G
Sbjct: 2 ATFKLVISNPKNGVAKQVEISGPEADKLI-GRRIGEEIPASELGLNLSEIFGEEIPADAK 60
Query: 161 LRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGPHVTDRAAMER 286
L++ GG DK GFPM+ V RV++L+S+GP R ER
Sbjct: 61 LKITGGTDKDGFPMRPDVHGPRRVKILLSRGPGFRPRERGER 102
>UniRef50_UPI00015BAF12 Cluster: SSU ribosomal protein S6E; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S6E - Ignicoccus hospitalis KIN4/I
Length = 236
Score = 45.2 bits (102), Expect = 0.002
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Frame = +2
Query: 53 KLFEV-VDEHKLRIFYEKRMGAEVEADQLGDEW-KGYVLRVAGGNDKQGFPMKQGVLTNS 226
K F++ ++ R F KR+G V A LG E KG L + GG+D+ GFPM+ +
Sbjct: 133 KAFQITIEGENARKFIGKRIGETVPASILGIETLKGLQLEIRGGSDESGFPMRPDIPGPV 192
Query: 227 RVRLLMSKGPHVTDRAAMER 286
+ R L+S P R ER
Sbjct: 193 KKRALLSGPPGFWPREKGER 212
>UniRef50_Q2NGM7 Cluster: 30S ribosomal protein S6e; n=2;
Methanobacteriaceae|Rep: 30S ribosomal protein S6e -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 130
Score = 43.2 bits (97), Expect = 0.008
Identities = 22/50 (44%), Positives = 30/50 (60%)
Frame = +2
Query: 104 RMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKG 253
++G E LG KGY LR+ GG+DK GFPMK+ V R + L++ G
Sbjct: 30 KIGEEFNGGVLG--LKGYKLRITGGSDKNGFPMKEDVDGTRRFKSLVNGG 77
>UniRef50_Q01CM6 Cluster: Chromosome 03 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 03 contig 1, DNA
sequence - Ostreococcus tauri
Length = 211
Score = 40.7 bits (91), Expect = 0.041
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = -2
Query: 256 RAL*HQKTNTAVCQDALFHRESLLVVAASDTKYIALPFI 140
RAL H++ +T V Q AL H E+LLVV D + ++LPF+
Sbjct: 173 RALGHEQEHTLVRQHALLHAEALLVVTTHDLEDVSLPFL 211
>UniRef50_Q6LXY7 Cluster: 30S ribosomal protein S6e; n=4;
Archaea|Rep: 30S ribosomal protein S6e - Methanococcus
maripaludis
Length = 124
Score = 39.9 bits (89), Expect = 0.072
Identities = 19/67 (28%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Frame = +2
Query: 101 KRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGP--HVTDRA 274
K++G E+ + E +GY L++ GG+D+ GF M+ + ++R+L+ +GP +V ++
Sbjct: 28 KKIGDEISGSIV--ELEGYKLKITGGSDRCGFAMRHDIHGAMKMRVLLKEGPGYNVKEKG 85
Query: 275 AMERENV 295
R+++
Sbjct: 86 LRRRKSL 92
>UniRef50_Q74MJ5 Cluster: 30S ribosomal protein S6e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S6e -
Nanoarchaeum equitans
Length = 126
Score = 39.5 bits (88), Expect = 0.096
Identities = 23/69 (33%), Positives = 40/69 (57%)
Frame = +2
Query: 8 AVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDK 187
+V+K+ VS P +G E + L Y K++G ++ ++G + GY L++ GG+D
Sbjct: 5 SVVKIVVSDPKSGKAIQIETKEPQWL---YGKKIGDTIDGSKIGLD--GYELKITGGSDI 59
Query: 188 QGFPMKQGV 214
GFPM++ V
Sbjct: 60 AGFPMRKEV 68
>UniRef50_Q9HMJ5 Cluster: 30S ribosomal protein S6e; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S6e -
Halobacterium salinarium (Halobacterium halobium)
Length = 131
Score = 39.5 bits (88), Expect = 0.096
Identities = 27/96 (28%), Positives = 46/96 (47%)
Frame = +2
Query: 8 AVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDK 187
A ++ V+ P +G FEV D F + +GA V+ +G + GY + + GG+D
Sbjct: 2 ATFQVAVADPESGRTYQFEV-DGQDANRFIGREIGAAVDGGAVGLD--GYTVEITGGSDD 58
Query: 188 QGFPMKQGVLTNSRVRLLMSKGPHVTDRAAMERENV 295
G PM++ V + + +L+ G ER+ V
Sbjct: 59 AGRPMREDVDGSDLMEVLLEGGAGFNPDEDGERKRV 94
Score = 37.1 bits (82), Expect = 0.51
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +1
Query: 199 DETGRPDKQPCSSSDV-----KGPSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKG 363
D+ GRP ++ SD+ +G + + P DGERKR +VRG V ++ L + I G
Sbjct: 57 DDAGRPMREDVDGSDLMEVLLEGGAGFNPDEDGERKRVTVRGKEVSEAVAQLNVAIDEHG 116
Query: 364 AQEIPGL 384
+ + L
Sbjct: 117 EEPVAEL 123
>UniRef50_A0RYX5 Cluster: Ribosomal protein S6E; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein S6E - Cenarchaeum
symbiosum
Length = 133
Score = 39.1 bits (87), Expect = 0.13
Identities = 21/54 (38%), Positives = 33/54 (61%)
Frame = +2
Query: 107 MGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGPHVTD 268
+G+E +A LG E K +R+ GG+DK G PM+ V +R +L+S+G + D
Sbjct: 39 IGSEADATALGLEGK---IRITGGSDKSGVPMRPDVHGPARKYVLLSRGVGLRD 89
>UniRef50_O29739 Cluster: 30S ribosomal protein S6e; n=7;
Euryarchaeota|Rep: 30S ribosomal protein S6e -
Archaeoglobus fulgidus
Length = 129
Score = 39.1 bits (87), Expect = 0.13
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Frame = +2
Query: 26 VSYPATG--CQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFP 199
+S P TG QK+ E + ++L K++G +V + + D Y L++ GG D+ GFP
Sbjct: 7 ISDPKTGRAYQKVVEGANANRL---IGKQIG-DVISGTIVDLPPDYELKITGGTDRDGFP 62
Query: 200 MKQGVLTNSRVRLLMSKG 253
M+ + +R RLL+S G
Sbjct: 63 MRPDLPGTARRRLLLSGG 80
Score = 33.1 bits (72), Expect = 8.3
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 262 YRPRRDGERKRKSVRGCIVDANLSVLALVIVRKG 363
+RP+ G RKRK VRG ++ ++ + V+V+ G
Sbjct: 83 FRPKEKGLRKRKGVRGRVISKDILQINTVVVKHG 116
>UniRef50_UPI0000DC1AEC Cluster: UPI0000DC1AEC related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC1AEC UniRef100 entry -
Rattus norvegicus
Length = 227
Score = 38.3 bits (85), Expect = 0.22
Identities = 36/106 (33%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Frame = +2
Query: 17 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGF 196
KLN+S+ Q L EV + KLR FYEK M E+ + +E N + F
Sbjct: 2 KLNISFLLIVYQILTEVDGKCKLRAFYEKCMTTEITVNFSCEE-----------NADKIF 50
Query: 197 PMKQGVLTNSRVRLLMSKGPHVTDRAAMERE-NVNQFVDVLLTPIS 331
MKQ VL + RV LL++ + RE N D + PIS
Sbjct: 51 SMKQEVLIHFRVHLLLNNLHSYIYKPLRTREMNYTSLQDAVKLPIS 96
>UniRef50_A7IAP8 Cluster: Ribosomal protein S6e; n=2; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S6e -
Methanoregula boonei (strain 6A8)
Length = 143
Score = 36.7 bits (81), Expect = 0.67
Identities = 18/51 (35%), Positives = 32/51 (62%)
Frame = +2
Query: 101 KRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKG 253
K++G EV+A LG GY + + GG+D+ G P ++ + R +LL+++G
Sbjct: 32 KKIGDEVDAGPLG--LAGYKILITGGSDQTGTPARKSLPGAGRRKLLLAEG 80
>UniRef50_A7DQN0 Cluster: Ribosomal protein S6e; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein S6e
- Candidatus Nitrosopumilus maritimus SCM1
Length = 137
Score = 35.9 bits (79), Expect = 1.2
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +2
Query: 107 MGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGPHVTDRAAMER 286
+G E +A +G K L++ GG+DK G PM+ + +R +L+SKG + D +R
Sbjct: 33 LGQETDASVVGLNGK---LKLTGGSDKSGVPMRNDIHGAARKYVLLSKGVGLQDAEKGQR 89
>UniRef50_Q87BM0 Cluster: Putative uncharacterized protein; n=1;
Xylella fastidiosa Temecula1|Rep: Putative
uncharacterized protein - Xylella fastidiosa (strain
Temecula1 / ATCC 700964)
Length = 109
Score = 35.5 bits (78), Expect = 1.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 151 GLCTSCRWRQRQARIPDETGRPDKQPCSSSDVKGPS 258
G C RWR ++ + DE G + PC+ DV+G S
Sbjct: 17 GACCMARWRCQEINVTDEVGYGMRLPCTPHDVRGCS 52
>UniRef50_Q980A6 Cluster: 30S ribosomal protein S6e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S6e -
Sulfolobus solfataricus
Length = 214
Score = 35.1 bits (77), Expect = 2.1
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +2
Query: 68 VDEHKLRIFYEKRMGAEVEADQL-GDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLM 244
VD++K ++G EA+QL G K L++ GG+D GFPM+ V+ ++ ++L+
Sbjct: 121 VDQNKATNLVGLKIGDVFEANQLIGLPVK---LKITGGSDNSGFPMRFDVIGAAKRKILL 177
Query: 245 SKGP 256
S P
Sbjct: 178 SGPP 181
Score = 33.5 bits (73), Expect = 6.3
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 244 VKGPSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVR 357
+ GP + P +GER+RK++RG + + + +IVR
Sbjct: 177 LSGPPGFYPNENGERRRKTIRGNTISQEIVQINTIIVR 214
>UniRef50_UPI0000DD81A8 Cluster: PREDICTED: SET domain containing
1B; n=1; Homo sapiens|Rep: PREDICTED: SET domain
containing 1B - Homo sapiens
Length = 2145
Score = 34.7 bits (76), Expect = 2.7
Identities = 29/88 (32%), Positives = 39/88 (44%)
Frame = -1
Query: 380 PGISWAPLRTITRAKTERLASTIHPRTDLRFLSPSRRGL*HEGPLTSEDEHGCLSGRPVS 201
PG + A RT T A T + TI PR+ LR+ P P TS E G +
Sbjct: 441 PGATRASSRTPTTAATNIIMYTILPRS-LRWPGPQPLS---GVPRTSRSEQSAALG---A 493
Query: 200 SGILACRCRQRHEVHSPSIHRLTDQPLL 117
+ + R R + H P++H QPLL
Sbjct: 494 AAVPRSRLNHRIQPHLPTLHHPPKQPLL 521
>UniRef50_A2BJZ7 Cluster: 30S ribosomal protein S6e; n=2;
Desulfurococcales|Rep: 30S ribosomal protein S6e -
Hyperthermus butylicus (strain DSM 5456 / JCM 9403)
Length = 217
Score = 33.9 bits (74), Expect = 4.8
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 244 VKGPSCYRPRRDGERKRKSVRGCIVDANLSVLALVIV 354
+ GP + PR GER+RK+VRG + ++ + VIV
Sbjct: 176 LSGPPGFHPREKGERRRKTVRGNTITHDIVQINTVIV 212
Score = 33.1 bits (72), Expect = 8.3
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +2
Query: 152 GYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGPHVTDRAAMER 286
GY L + GG+D GFPM + + R+L+S P R ER
Sbjct: 146 GYKLLIRGGSDNSGFPMLPSIPGPVKKRVLLSGPPGFHPREKGER 190
>UniRef50_A6L045 Cluster: Putative uncharacterized protein; n=1;
Bacteroides vulgatus ATCC 8482|Rep: Putative
uncharacterized protein - Bacteroides vulgatus (strain
ATCC 8482 / DSM 1447 / NCTC 11154)
Length = 541
Score = 33.5 bits (73), Expect = 6.3
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = +1
Query: 343 LVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV 483
L+ V +EI LT GNVP+ + R ++RK NLS EDD+ Y+
Sbjct: 494 LLRVNLSTKEISMLT-GNVPKTINMNRY-RLRKSLNLSSEDDLTDYL 538
>UniRef50_O86476 Cluster: Clumping factor B precursor; n=31;
Staphylococcus aureus|Rep: Clumping factor B precursor -
Staphylococcus aureus
Length = 913
Score = 33.5 bits (73), Expect = 6.3
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +2
Query: 17 KLNVSYPAT-GCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 193
KL+ SY A L EV D+ K RI+YE A ++ GD K YV+ V G D G
Sbjct: 441 KLSDSYYADPNDSNLKEVTDQFKNRIYYEHPNVASIK---FGDITKTYVVLVEGHYDNTG 497
Query: 194 FPMKQGVL 217
+K V+
Sbjct: 498 KNLKTQVI 505
>UniRef50_UPI000155618C Cluster: PREDICTED: similar to poliovirus
receptor-related 4, partial; n=1; Ornithorhynchus
anatinus|Rep: PREDICTED: similar to poliovirus
receptor-related 4, partial - Ornithorhynchus anatinus
Length = 345
Score = 33.1 bits (72), Expect = 8.3
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 169 RWRQRQARIPDETGRPDKQPCSSSDVKGPSCYR 267
RWRQ + PD RP ++PC +DV P +R
Sbjct: 20 RWRQGR---PDSLTRPTRRPCGPADVAAPEIHR 49
>UniRef50_Q6N427 Cluster: Phytoene dehydrogenase-related protein;
n=24; Bacteria|Rep: Phytoene dehydrogenase-related
protein - Rhodopseudomonas palustris
Length = 590
Score = 33.1 bits (72), Expect = 8.3
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -1
Query: 218 SGRPVSSGILACRCRQ-RHEVHSPSIHRLTDQPL 120
SGRPV+SGILA C Q +++ +P HR + P+
Sbjct: 22 SGRPVTSGILASLCEQWQNQPRTPLSHRSGNLPM 55
>UniRef50_Q18YJ9 Cluster: DNA polymerase I; n=2; Desulfitobacterium
hafniense|Rep: DNA polymerase I - Desulfitobacterium
hafniense (strain DCB-2)
Length = 873
Score = 33.1 bits (72), Expect = 8.3
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +1
Query: 373 IPGLTDGNVPRRLG-PKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEEKKMLNPDIRAPK 549
I GLTD + R LG P++ +K + + V+RY+ + V+ AKEE ++ R +
Sbjct: 707 IYGLTDFGLGRDLGVPRKEAKTYIETYFHRYEGVKRYLEEIVVKAKEEGQVRTLLNRLRR 766
Query: 550 IQRLVHP 570
I L HP
Sbjct: 767 IPELRHP 773
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 801,492,303
Number of Sequences: 1657284
Number of extensions: 16434094
Number of successful extensions: 50276
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 48044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50244
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 68319938570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -