Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30539
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   155   9e-39
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   154   1e-38
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     27   3.1  
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...    25   9.5  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   9.5  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  155 bits (375), Expect = 9e-39
 Identities = 77/108 (71%), Positives = 90/108 (83%), Gaps = 1/108 (0%)
 Frame = +1

Query: 250 GPSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRAS 429
           G  CYRPRRDGERKRKSVRGCIV  +L+VLAL IV++G Q+IPGLTD  VP+RLGPKRAS
Sbjct: 80  GHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQDIPGLTDVTVPKRLGPKRAS 139

Query: 430 KIRKLFNLSKEDDVRRYVVKR-VLPAKEEKKMLNPDIRAPKIQRLVHP 570
           KIR+ FNLSKEDDVR++V++R V+P KE KK   P  +APKIQRLV P
Sbjct: 140 KIRRFFNLSKEDDVRQFVIRREVVPKKEGKK---PYTKAPKIQRLVTP 184



 Score =  111 bits (266), Expect = 1e-25
 Identities = 50/80 (62%), Positives = 60/80 (75%)
 Frame = +2

Query: 14  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 193
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 194 FPMKQGVLTNSRVRLLMSKG 253
           FPM QGVL   RVRLL+  G
Sbjct: 61  FPMFQGVLLPHRVRLLLRAG 80


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  154 bits (374), Expect = 1e-38
 Identities = 76/108 (70%), Positives = 90/108 (83%), Gaps = 1/108 (0%)
 Frame = +1

Query: 250 GPSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRAS 429
           G  CYRPRRDGERKRKSVRGCIV  +L+VLAL I+++G Q+IPGLTD  VP+RLGPKRAS
Sbjct: 80  GHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQDIPGLTDVTVPKRLGPKRAS 139

Query: 430 KIRKLFNLSKEDDVRRYVVKR-VLPAKEEKKMLNPDIRAPKIQRLVHP 570
           KIR+ FNLSKEDDVR++V++R V+P KE KK   P  +APKIQRLV P
Sbjct: 140 KIRRFFNLSKEDDVRQFVIRREVVPKKEGKK---PYTKAPKIQRLVTP 184



 Score =  111 bits (266), Expect = 1e-25
 Identities = 50/80 (62%), Positives = 60/80 (75%)
 Frame = +2

Query: 14  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 193
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 194 FPMKQGVLTNSRVRLLMSKG 253
           FPM QGVL   RVRLL+  G
Sbjct: 61  FPMFQGVLLPHRVRLLLRAG 80


>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 713 GDGTLGNSLPFLLLQANLSIIQPSEDLPLSETLLLQSETMTST 585
           G   LG ++PF+   ++ +   P+EDL   E L    ET  ST
Sbjct: 307 GGPALGLNIPFMFGGSSSNHDYPAEDLSAQEILKNDQETTPST 349


>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -1

Query: 743 GLAVLNLLSLGDGTLGNSLPFLLLQANLSIIQPSEDLPLSETLLLQSETMTS 588
           GL +L +   G G   + LP+L  + + S I    DL   +T   + E + S
Sbjct: 56  GLKLLQITDNGSGIQYDDLPYLCQRFSTSKIDNFNDLQHLQTFGFRGEALAS 107


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 468 IIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTLAHNNKSQD 334
           +I + K E +   GSTFG   +G       R++   L H+N  QD
Sbjct: 98  VIIWHKEEAIPGLGSTFG---SGEKHTENWRSYRRLLGHDNDIQD 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,224,839
Number of Sequences: 5004
Number of extensions: 64679
Number of successful extensions: 171
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)