Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30539
(797 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 131 7e-31
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 129 2e-30
10_07_0139 + 13327851-13327880,13327999-13329049,13329089-133296... 31 1.1
02_01_0295 - 1973115-1973404,1974138-1974663 31 1.1
09_04_0727 + 19765175-19765384,19765523-19765595,19766476-197665... 29 5.7
02_05_0956 - 33064104-33066425 28 7.5
11_01_0125 + 1018059-1018403 28 9.9
07_01_1073 + 9566727-9566963,9566992-9567180 28 9.9
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 28 9.9
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 131 bits (316), Expect = 7e-31
Identities = 70/113 (61%), Positives = 83/113 (73%), Gaps = 4/113 (3%)
Frame = +1
Query: 247 KGPSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPK 420
+G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG ++PGLTD PR GPK
Sbjct: 79 RGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGENDLPGLTDTEKPRMRGPK 138
Query: 421 RASKIRKLFNLSKEDDVRRYV--VKRVLPAKEEKKMLNPDIRAPKIQRLVHPL 573
RASKIRKLFNLSK+DDVR+YV +R K KK+ +APKIQRLV PL
Sbjct: 139 RASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGKKV----SKAPKIQRLVTPL 187
Score = 110 bits (265), Expect = 1e-24
Identities = 48/80 (60%), Positives = 61/80 (76%)
Frame = +2
Query: 14 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 193
MK N++ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 194 FPMKQGVLTNSRVRLLMSKG 253
FPMKQGVLT RVRLL+ +G
Sbjct: 61 FPMKQGVLTAGRVRLLLHRG 80
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 129 bits (312), Expect = 2e-30
Identities = 69/113 (61%), Positives = 83/113 (73%), Gaps = 4/113 (3%)
Frame = +1
Query: 247 KGPSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPK 420
+G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG ++PGLTD PR GPK
Sbjct: 79 RGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGDNDLPGLTDTEKPRMRGPK 138
Query: 421 RASKIRKLFNLSKEDDVRRYV--VKRVLPAKEEKKMLNPDIRAPKIQRLVHPL 573
RASKIRKLFNL+K+DDVR+YV +R K KK+ +APKIQRLV PL
Sbjct: 139 RASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKKV----SKAPKIQRLVTPL 187
Score = 113 bits (272), Expect = 2e-25
Identities = 49/80 (61%), Positives = 62/80 (77%)
Frame = +2
Query: 14 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 193
MK N++ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 194 FPMKQGVLTNSRVRLLMSKG 253
FPMKQGVLT+ RVRLL+ +G
Sbjct: 61 FPMKQGVLTSGRVRLLLHRG 80
>10_07_0139 +
13327851-13327880,13327999-13329049,13329089-13329648,
13329757-13329904,13330935-13331024,13331148-13331208,
13331301-13331450,13331571-13331629,13332148-13332282,
13333028-13333119,13333210-13333278
Length = 814
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/56 (25%), Positives = 33/56 (58%)
Frame = +1
Query: 406 RLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEEKKMLNPDIRAPKIQRLVHPL 573
++ PK+A ++ + + +DD+ R V + +P++++ K R+PK +R V+ +
Sbjct: 325 KVEPKKAHCSDRISHKTTQDDMERKVPSKYIPSEKKGKTAESCSRSPKRERRVNTM 380
>02_01_0295 - 1973115-1973404,1974138-1974663
Length = 271
Score = 31.1 bits (67), Expect = 1.1
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Frame = +1
Query: 241 DVKGPSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLT--DGNVPRRLG 414
D+ G S + + G ++ RG + + S AL + GA PG +P R+G
Sbjct: 164 DISGKSIGKGFQGGIKRHNFKRGLMTHGSKSHRALGSI--GAGTTPGRVYKGKKMPGRMG 221
Query: 415 PKRASKIRKLFNLSKEDDVRRYVVKRVLPAK 507
+ +KIRKL + ++D++ ++K +P K
Sbjct: 222 GTK-TKIRKLKIVKIDNDLKVVMIKGAVPGK 251
>09_04_0727 +
19765175-19765384,19765523-19765595,19766476-19766570,
19766666-19768450,19768533-19768721,19768816-19768958,
19769075-19769320,19769975-19770059,19770117-19770191,
19770304-19770369,19770466-19770712,19770824-19771242
Length = 1210
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 169 RWRQRQARIPDE-TGRPDKQPCSSSDVKGPSCYRPRRDGERKRKSVRG 309
R+R + ++ DE + RP ++ S+S PRR+G R R+S+RG
Sbjct: 129 RYRSSKNKVDDEVSARPKRKKLSNSSSI------PRREGLRPRRSIRG 170
>02_05_0956 - 33064104-33066425
Length = 773
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -3
Query: 507 LGWEHAFDDITTYIIFFAKV 448
+G EHA DD++TYII A V
Sbjct: 23 VGVEHATDDVSTYIIHVAHV 42
>11_01_0125 + 1018059-1018403
Length = 114
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +1
Query: 145 MEGLCTSCRWRQRQARIPDETGRPDKQPCSSSDVKGPSCYRPRRDGERKRKSVRGC 312
+EG+ RWR+ AR RP + S G + G K +++RGC
Sbjct: 57 VEGVGGRDRWRRGAARRGRRRQRPRDEKASGGRGGGADLGKDSGRGRTKNEALRGC 112
>07_01_1073 + 9566727-9566963,9566992-9567180
Length = 141
Score = 27.9 bits (59), Expect = 9.9
Identities = 23/74 (31%), Positives = 31/74 (41%)
Frame = -1
Query: 395 FPSVNPGISWAPLRTITRAKTERLASTIHPRTDLRFLSPSRRGL*HEGPLTSEDEHGCLS 216
F S + ++ L TITRAKTE S + + F+ +G + E G S
Sbjct: 37 FNSDDDAMALRILNTITRAKTE--TSPGRAKAEEMFVRERMCNGTSDGCGSGSGEDGTWS 94
Query: 215 GRPVSSGILACRCR 174
G G CRCR
Sbjct: 95 GGSREDGQRRCRCR 108
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +1
Query: 181 RQARIPDET--GRPDKQPCSSSDVKGPSCYRPRRDGERKRKSVRGCIVDANLSVLALVIV 354
++ +IP + GR +K+ S++D + PRR R + R C++D + + +
Sbjct: 629 QRGQIPSDALPGRTNKKRKSTADTS----FNPRRRTSRPENASRACVLDGSTTQNRFQFI 684
Query: 355 RKGAQ 369
R+ A+
Sbjct: 685 REEAE 689
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,410,441
Number of Sequences: 37544
Number of extensions: 486242
Number of successful extensions: 1447
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1445
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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