Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30539
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)              168   5e-42
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   37   0.022
SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)                      29   4.4  
SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)                      29   5.8  
SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)                     29   5.8  
SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 29   5.8  
SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14)                 28   7.6  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score =  168 bits (408), Expect = 5e-42
 Identities = 90/152 (59%), Positives = 107/152 (70%), Gaps = 9/152 (5%)
 Frame = +1

Query: 145 MEGLCTSCRWRQRQARIP---DETGRPDKQPCSSSD------VKGPSCYRPRRDGERKRK 297
           + G C    W+    RI    D+ G P KQ   ++        KG SCYRPRR GERKRK
Sbjct: 3   VSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKRK 62

Query: 298 SVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRR 477
           SVRGCIVD+ LSVL+LVIV+KG Q+IPGLTD  +PRRLGPKR  KIRK+FNLSKEDDVR+
Sbjct: 63  SVRGCIVDSQLSVLSLVIVKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVRQ 122

Query: 478 YVVKRVLPAKEEKKMLNPDIRAPKIQRLVHPL 573
           YV++R LP KE KK  +   +APKIQRLV P+
Sbjct: 123 YVIRRPLPEKEGKKAKS---KAPKIQRLVTPV 151



 Score = 84.2 bits (199), Expect = 1e-16
 Identities = 35/46 (76%), Positives = 40/46 (86%)
 Frame = +2

Query: 116 EVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKG 253
           EV  + LGDEWKGYV R+ GGNDKQGFPMKQG++TN RVRLL+SKG
Sbjct: 2   EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKG 47


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 36.7 bits (81), Expect = 0.022
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -2

Query: 241 QKTNTAVCQDALFHRESLLVVAASDTKYIALPFIA*LISLYFGAHALFVK 92
           Q+ + A+  D L H +SL V+  SD + ++LP I   +  Y   H L ++
Sbjct: 257 QEADAAIGHDPLLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVIE 306


>SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)
          Length = 172

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +1

Query: 301 VRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRK 441
           VR C +D   +VLA  +  + A E  GLT+G V    GP R   +++
Sbjct: 86  VRSCPMDKQSTVLA--VETREACESKGLTEGCVSSAFGPGREEPVQE 130


>SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)
          Length = 1365

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 122 EADQLGDEWKGYVL--RVAGGNDKQGFPMK 205
           E D+ G EW+G+V      G  D QG+ MK
Sbjct: 815 EEDRTGQEWEGHVCDKEPEGKRDNQGYKMK 844


>SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)
          Length = 291

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 391 GNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVK 489
           G+   + GP + SKI K+    ++DDV+  VVK
Sbjct: 221 GSEAAKTGPNKLSKIDKVILAVEDDDVQEIVVK 253


>SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1182

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 713 QGKEDSKRQGRFKLFKCVNFQRSFLSP 793
           QG E +KRQ +F L++C+++  +   P
Sbjct: 98  QGSEGAKRQAQFDLYQCLDYHLAASQP 124


>SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14)
          Length = 273

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = +1

Query: 283 ERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASK-IRKLFNLSK 459
           + K KSV+   VD + S   L   R  AQE   L DG   ++L    A K + K   L K
Sbjct: 191 DNKNKSVKATTVDKSASENKLKRKRNSAQE--NLDDGVKRKKLKDAGAMKSLVKELELEK 248

Query: 460 EDDVRRYVVKRVLPAKEEKK 519
             + R  +V+     K+EK+
Sbjct: 249 LVEQRSELVQEKQKKKKEKE 268


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,088,115
Number of Sequences: 59808
Number of extensions: 539846
Number of successful extensions: 1721
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1719
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)