Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30539
         (797 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   135   3e-32
Z54281-4|CAA91049.1|  199|Caenorhabditis elegans Hypothetical pr...    31   0.72 
Z74033-10|CAA98478.1|  805|Caenorhabditis elegans Hypothetical p...    29   5.1  
AL022272-5|CAA18355.1|  805|Caenorhabditis elegans Hypothetical ...    29   5.1  
AF099919-13|AAC68798.1|  636|Caenorhabditis elegans Hypothetical...    29   5.1  
U64599-2|ABB88205.1|  420|Caenorhabditis elegans Unidentified vi...    28   6.7  
U64599-1|AAB04560.3|  426|Caenorhabditis elegans Unidentified vi...    28   6.7  
AF078787-7|AAC26954.2|  518|Caenorhabditis elegans Vegf (vascula...    28   8.9  
AC090999-26|ABA00172.1|  398|Caenorhabditis elegans Hypothetical...    28   8.9  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  135 bits (327), Expect = 3e-32
 Identities = 70/110 (63%), Positives = 83/110 (75%), Gaps = 2/110 (1%)
 Frame = +1

Query: 247 KGPSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRA 426
           KG SCYR R++GERKRKSVRGCIVDAN+S L+LVIV+KG  EI GLTD  +PR+LGPKRA
Sbjct: 79  KGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGEIEGLTDSVLPRKLGPKRA 138

Query: 427 SKIRKLFNLSKEDDVRRYVV--KRVLPAKEEKKMLNPDIRAPKIQRLVHP 570
           SKIRKLFNL+K DDV +YV+   +  P    K +      APKIQRL+ P
Sbjct: 139 SKIRKLFNLTKHDDVTKYVITHDKTFPDGVTKTI------APKIQRLITP 182



 Score =  131 bits (317), Expect = 5e-31
 Identities = 58/80 (72%), Positives = 67/80 (83%)
 Frame = +2

Query: 14  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 193
           M+LN +YPATG QK FEV +E KLR+F+EKRM  EV  D LGDEWKGYV+R+ GGNDKQG
Sbjct: 1   MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQG 60

Query: 194 FPMKQGVLTNSRVRLLMSKG 253
           FPMKQG+LTN RVRLL+ KG
Sbjct: 61  FPMKQGILTNGRVRLLLKKG 80


>Z54281-4|CAA91049.1|  199|Caenorhabditis elegans Hypothetical
           protein F46C5.7 protein.
          Length = 199

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 19/72 (26%), Positives = 36/72 (50%)
 Frame = -2

Query: 313 YIHELIYVFSLHRGAVCNMRAL*HQKTNTAVCQDALFHRESLLVVAASDTKYIALPFIA* 134
           ++  L+Y+   + G+V N  AL H  T +A     +     L+ +   ++ YIA  ++A 
Sbjct: 68  FVFVLLYL-EFYFGSVYNCPALLHLHTLSAAFMSMVCWLSVLIPIFFGESIYIASRYVAH 126

Query: 133 LISLYFGAHALF 98
           +I  Y+G   +F
Sbjct: 127 VIYKYYGCQVIF 138


>Z74033-10|CAA98478.1|  805|Caenorhabditis elegans Hypothetical
           protein H12C20.2a protein.
          Length = 805

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/43 (27%), Positives = 27/43 (62%)
 Frame = +1

Query: 427 SKIRKLFNLSKEDDVRRYVVKRVLPAKEEKKMLNPDIRAPKIQ 555
           S+ ++L N S   + +R  V + +P+K +KK+ + ++R+  I+
Sbjct: 459 SRTQRLENFSFTMEPKRVEVSKKIPSKSDKKLTDEELRSAVIE 501


>AL022272-5|CAA18355.1|  805|Caenorhabditis elegans Hypothetical
           protein H12C20.2a protein.
          Length = 805

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/43 (27%), Positives = 27/43 (62%)
 Frame = +1

Query: 427 SKIRKLFNLSKEDDVRRYVVKRVLPAKEEKKMLNPDIRAPKIQ 555
           S+ ++L N S   + +R  V + +P+K +KK+ + ++R+  I+
Sbjct: 459 SRTQRLENFSFTMEPKRVEVSKKIPSKSDKKLTDEELRSAVIE 501


>AF099919-13|AAC68798.1|  636|Caenorhabditis elegans Hypothetical
           protein F40G9.1 protein.
          Length = 636

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +2

Query: 32  YPATGCQKLFEVVDEHK---LRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 190
           Y   G  ++FE+  E K    RIF EK +   +   ++ ++     L++ G NDK+
Sbjct: 6   YLHVGLNRIFEIAKEKKNGKFRIFLEKNVKNVIFLQEIFEKSLFLCLKINGSNDKK 61


>U64599-2|ABB88205.1|  420|Caenorhabditis elegans Unidentified
           vitellogenin-linkedtranscript protein 6, isoform b
           protein.
          Length = 420

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 701 LGNSLPFLLLQANLSIIQPSEDLPLSETLLLQSETMTSTLQNYR 570
           L +SLP        S+ QP E+ P+  T  L+ E   + LQ +R
Sbjct: 340 LKSSLPIKSTMEPASVYQPEEESPVDSTENLEMERKKAELQAWR 383


>U64599-1|AAB04560.3|  426|Caenorhabditis elegans Unidentified
           vitellogenin-linkedtranscript protein 6, isoform a
           protein.
          Length = 426

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 701 LGNSLPFLLLQANLSIIQPSEDLPLSETLLLQSETMTSTLQNYR 570
           L +SLP        S+ QP E+ P+  T  L+ E   + LQ +R
Sbjct: 346 LKSSLPIKSTMEPASVYQPEEESPVDSTENLEMERKKAELQAWR 389


>AF078787-7|AAC26954.2|  518|Caenorhabditis elegans Vegf (vascular
           endothelial growthfactor) receptor family protein 2
           protein.
          Length = 518

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 47  CQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 190
           C K F+   + ++    E+++  E E  Q  D W G  LR  G  DK+
Sbjct: 272 CVKFFKNYMQEEVVQNIERKLQFEREEQQELDSWTGKSLRAEGVEDKE 319


>AC090999-26|ABA00172.1|  398|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.19 protein.
          Length = 398

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 777 LWKFTHLKSLN-RPCRFESSFPWRRHP 700
           ++KF   K  N +P  F+ +FP RRHP
Sbjct: 22  IFKFVGTKEHNPKPAAFQQNFPPRRHP 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,186,025
Number of Sequences: 27780
Number of extensions: 382911
Number of successful extensions: 1104
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)