Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30539
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   7.6  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   7.6  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 732 FESSFPWRRHPWEF 691
           FE S  W+++PW++
Sbjct: 89  FELSVFWQQYPWQW 102



 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 104 RMGAEVEADQLGDEWKGYV 160
           R+G  +++D L +  +GYV
Sbjct: 227 RIGLRIQSDSLAENVEGYV 245


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 673 NKRKGREFPRVPSPRERRFKTARPVQAFQMREFPKKLLK 789
           N   G + PR   PR  RFK+    Q    R+  ++L+K
Sbjct: 57  NPGPGSKGPR-DFPRSHRFKSLPRCQLSNKRDRSRELIK 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,037
Number of Sequences: 438
Number of extensions: 5062
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)