Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30539
(797 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B) 128 3e-30
At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso... 124 5e-29
At1g03780.2 68414.m00358 targeting protein-related similar to mi... 30 2.0
At1g03780.1 68414.m00359 targeting protein-related similar to mi... 30 2.0
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051... 29 2.7
At1g21740.1 68414.m02721 expressed protein contains Pfam domains... 29 3.6
At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / gl... 29 4.7
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica... 28 8.3
>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
Length = 249
Score = 128 bits (310), Expect = 3e-30
Identities = 70/113 (61%), Positives = 82/113 (72%), Gaps = 4/113 (3%)
Frame = +1
Query: 247 KGPSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPK 420
+G C+R RR GER+RKSVRGCIV +LSVL LVIV+KG ++PGLTD PR GPK
Sbjct: 79 RGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGVSDLPGLTDTEKPRMRGPK 138
Query: 421 RASKIRKLFNLSKEDDVRRYV--VKRVLPAKEEKKMLNPDIRAPKIQRLVHPL 573
RASKIRKLFNL KEDDVR+YV +R K+ KK+ +APKIQRLV PL
Sbjct: 139 RASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKV----SKAPKIQRLVTPL 187
Score = 111 bits (267), Expect = 5e-25
Identities = 49/80 (61%), Positives = 61/80 (76%)
Frame = +2
Query: 14 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 193
MK NV+ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 194 FPMKQGVLTNSRVRLLMSKG 253
FPMKQGVLT RVRLL+ +G
Sbjct: 61 FPMKQGVLTPGRVRLLLHRG 80
>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
protein S6, Arabidopsis thaliana, PID:g2662469
Length = 250
Score = 124 bits (300), Expect = 5e-29
Identities = 69/113 (61%), Positives = 81/113 (71%), Gaps = 4/113 (3%)
Frame = +1
Query: 247 KGPSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPK 420
+G C+R RR GER+RKSVRGCIV +LSVL LVIV+KG ++PGLTD PR GPK
Sbjct: 79 RGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPK 138
Query: 421 RASKIRKLFNLSKEDDVRRYV--VKRVLPAKEEKKMLNPDIRAPKIQRLVHPL 573
RASKIRKLFNL KEDDVR YV +R K+ K++ +APKIQRLV PL
Sbjct: 139 RASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEV----SKAPKIQRLVTPL 187
Score = 112 bits (270), Expect = 2e-25
Identities = 50/80 (62%), Positives = 61/80 (76%)
Frame = +2
Query: 14 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 193
MK NV+ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60
Query: 194 FPMKQGVLTNSRVRLLMSKG 253
FPMKQGVLT RVRLL+ +G
Sbjct: 61 FPMKQGVLTPGRVRLLLHRG 80
>At1g03780.2 68414.m00358 targeting protein-related similar to
microtubule-associated protein / targeting protein for
Xklp2 ((TPX2) GI:8926138) {Homo sapiens}; similar to
Restricted expression proliferation associated protein
100 (p100) (Differentially expressed in lung cells 2)
(DIL-2) (Targeting protein for Xklp2) (C20orf1 protein)
(C20orf2 protein) (Protein FLS353)(SP:Q9ULW0) {Homo
sapiens}
Length = 725
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +1
Query: 235 SSDVKGPSCYRPRRDGERK---RKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPR 405
+S +K PS RP+ + K +KSV+G N++ +I A + L DG +
Sbjct: 183 ASLLKNPSTLRPKNQSQAKGSHQKSVKGETNLNNIASTTNLIQENQAIKRQKLDDGKSRQ 242
Query: 406 RLGPKRASKIRKLFN 450
L PK A+ + K N
Sbjct: 243 ILNPKPATLLHKTRN 257
>At1g03780.1 68414.m00359 targeting protein-related similar to
microtubule-associated protein / targeting protein for
Xklp2 ((TPX2) GI:8926138) {Homo sapiens}; similar to
Restricted expression proliferation associated protein
100 (p100) (Differentially expressed in lung cells 2)
(DIL-2) (Targeting protein for Xklp2) (C20orf1 protein)
(C20orf2 protein) (Protein FLS353)(SP:Q9ULW0) {Homo
sapiens}
Length = 687
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +1
Query: 235 SSDVKGPSCYRPRRDGERK---RKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPR 405
+S +K PS RP+ + K +KSV+G N++ +I A + L DG +
Sbjct: 183 ASLLKNPSTLRPKNQSQAKGSHQKSVKGETNLNNIASTTNLIQENQAIKRQKLDDGKSRQ 242
Query: 406 RLGPKRASKIRKLFN 450
L PK A+ + K N
Sbjct: 243 ILNPKPATLLHKTRN 257
>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
Krr1 family
Length = 638
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/45 (28%), Positives = 28/45 (62%)
Frame = +1
Query: 382 LTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEEK 516
+ +G+V ++ ++A + K + KEDDVR+ +KR+ K+++
Sbjct: 288 VVEGSVRKKDNARKAQRKNKDERMKKEDDVRKEELKRLKNVKKKE 332
>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 953
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 50 QKLF-EVVDEHKLRIFYEKRMGAEVEADQLGDE 145
+KL+ EV DE KLR+ YE++ + D LG E
Sbjct: 602 KKLYKEVKDEEKLRVVYEEKCRTLKKLDSLGAE 634
>At1g67280.1 68414.m07657 lactoylglutathione lyase, putative /
glyoxalase I, putative similar to putative
lactoylglutathione lyase SP:Q39366, GI:2494843 from
[Brassica oleracea]
Length = 350
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +2
Query: 35 PATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPM 202
P CQ + V D + FYEK G E+ + E+K Y + + G + FP+
Sbjct: 216 PEPLCQVMLRVGDLDRAIKFYEKAFGMELLRTRDNPEYK-YTIAMMGYGPEDKFPV 270
>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to RAD54
[Drosophila melanogaster] GI:1765914; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 888
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 370 EIPGLTDGNVPRRLGPKRASKIRKL 444
E+PGL D V L PK+ ++++KL
Sbjct: 620 ELPGLADFTVVLNLSPKQLNEVKKL 644
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,448,799
Number of Sequences: 28952
Number of extensions: 364337
Number of successful extensions: 1074
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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