Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30538
         (324 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia nu...    63   1e-09
UniRef50_Q8T101 Cluster: Titin-like protein; n=4; Endopterygota|...    56   1e-07
UniRef50_UPI0000E4800E Cluster: PREDICTED: similar to protein F2...    46   1e-04
UniRef50_Q10126 Cluster: Uncharacterized protein F52C9.6; n=7; C...    41   0.006
UniRef50_A4A8U3 Cluster: Putative uncharacterized protein; n=1; ...    32   2.1  
UniRef50_A3ZV25 Cluster: Putative uncharacterized protein; n=1; ...    31   4.9  
UniRef50_Q14MQ1 Cluster: Hypothetical transmembrane protein; n=1...    31   6.5  
UniRef50_Q67MN6 Cluster: AraC family transcriptional regulator; ...    30   8.6  
UniRef50_Q396B7 Cluster: Putative uncharacterized protein; n=1; ...    30   8.6  

>UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia
           nubilalis|Rep: Reverse transcriptase - Ostrinia
           nubilalis (European corn borer)
          Length = 497

 Score = 63.3 bits (147), Expect = 1e-09
 Identities = 26/50 (52%), Positives = 33/50 (66%), Gaps = 4/50 (8%)
 Frame = -3

Query: 169 QWAGRFSRTTDNRWVKRVLEWRPRIGKRSAERP*ARWSDD----GGAGWL 32
           QWAG  +R  D RW ++VLEWRPR G+RS  RP  RW+DD     G+ W+
Sbjct: 424 QWAGHIARRADGRWGRKVLEWRPRAGRRSVGRPPTRWTDDLVKVAGSTWM 473


>UniRef50_Q8T101 Cluster: Titin-like protein; n=4;
           Endopterygota|Rep: Titin-like protein - Bombyx mori
           (Silk moth)
          Length = 3354

 Score = 56.4 bits (130), Expect = 1e-07
 Identities = 25/34 (73%), Positives = 25/34 (73%)
 Frame = +2

Query: 68  LRAFCTAFSNSRSPLKNAFNPTVIGCPAKTTSPL 169
           LRA CTAFSNSRSP KNA  P  IGCPA   SPL
Sbjct: 852 LRASCTAFSNSRSPFKNALTPMAIGCPANMASPL 885


>UniRef50_UPI0000E4800E Cluster: PREDICTED: similar to protein
           F28E10.3 [imported] - Caenorhabditis elegans; n=4;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           protein F28E10.3 [imported] - Caenorhabditis elegans -
           Strongylocentrotus purpuratus
          Length = 824

 Score = 46.4 bits (105), Expect = 1e-04
 Identities = 19/44 (43%), Positives = 22/44 (50%)
 Frame = -3

Query: 166 WAGRFSRTTDNRWVKRVLEWRPRIGKRSAERP*ARWSDDGGAGW 35
           WAG  SR  DNRW   +  W P  GKR+  R   RW D+    W
Sbjct: 364 WAGHISRRNDNRWSSAITHWTPYEGKRNRGRQRKRWRDELQQFW 407


>UniRef50_Q10126 Cluster: Uncharacterized protein F52C9.6; n=7;
           Caenorhabditis elegans|Rep: Uncharacterized protein
           F52C9.6 - Caenorhabditis elegans
          Length = 279

 Score = 40.7 bits (91), Expect = 0.006
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = -3

Query: 166 WAGRFSRTTDNRWVKRVLEWRPRIGKRSAERP*ARWSD 53
           WAG  +R  D RW   + EWRP   KR   R   RW+D
Sbjct: 202 WAGHVARRKDGRWTTLMTEWRPWNWKRYVGRTPMRWTD 239


>UniRef50_A4A8U3 Cluster: Putative uncharacterized protein; n=1;
           Congregibacter litoralis KT71|Rep: Putative
           uncharacterized protein - Congregibacter litoralis KT71
          Length = 131

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -3

Query: 175 LNQWAGRFSRTTDNRWVKRVLEWRPRI 95
           LN +A R +  TD RWV+RVL W  R+
Sbjct: 72  LNMFA-RIAVVTDKRWVQRVLSWEDRV 97


>UniRef50_A3ZV25 Cluster: Putative uncharacterized protein; n=1;
            Blastopirellula marina DSM 3645|Rep: Putative
            uncharacterized protein - Blastopirellula marina DSM 3645
          Length = 1270

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = -3

Query: 193  IRALYILNQWAGRFSRTTDNRWVKRVLEWRPRIGKRSAERP*ARWSDDGGAGW 35
            I A+ +L +W G F  +      +RV+ W+    +   E P A+  D     W
Sbjct: 1054 INAIRLLEKWTGEFPASNSAPMAERVVAWQDWFAQTHPEMPEAKPIDVAKGNW 1106


>UniRef50_Q14MQ1 Cluster: Hypothetical transmembrane protein; n=1;
           Spiroplasma citri|Rep: Hypothetical transmembrane
           protein - Spiroplasma citri
          Length = 233

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +3

Query: 192 IVFFGSDHIIIVW*TKN--VIVILS*CYKFGLKFVWTDDCSINIL 320
           I +  ++HI+++W  KN  +I I++  Y F LK  +  D +  IL
Sbjct: 82  IYYVNNNHILVLWLIKNISIIFIITFIYLFDLKTTFLHDFAFQIL 126


>UniRef50_Q67MN6 Cluster: AraC family transcriptional regulator;
           n=26; Firmicutes|Rep: AraC family transcriptional
           regulator - Symbiobacterium thermophilum
          Length = 296

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 160 GRFSRTTDNRWVKRVLEWRPRIGKRSAERP*ARWSD 53
           G F  T  + W +   EW P  G ++AE P   W++
Sbjct: 242 GPFPETLQSTWARIYAEWFPSSGYQAAEGPEILWNE 277


>UniRef50_Q396B7 Cluster: Putative uncharacterized protein; n=1;
           Burkholderia sp. 383|Rep: Putative uncharacterized
           protein - Burkholderia sp. (strain 383) (Burkholderia
           cepacia (strain ATCC 17760/ NCIB 9086 / R18194))
          Length = 207

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -3

Query: 142 TDNRWVKRVLEWRPRIGKRSAERP*ARWSDDGGAGWLAGTG*EKP 8
           T  RW++ V + +PRIG R   +  A W +   AG LA  G  +P
Sbjct: 73  THERWLECVADVKPRIGDRVLLQSPANWPEYLIAGLLARKGHGEP 117


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 301,920,444
Number of Sequences: 1657284
Number of extensions: 5333572
Number of successful extensions: 12349
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12347
length of database: 575,637,011
effective HSP length: 84
effective length of database: 436,425,155
effective search space used: 10037778565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)