Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30538
         (324 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    20   5.6  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           20   7.5  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    19   9.9  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 20.2 bits (40), Expect = 5.6
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 46  PHHHSTEPKGVLHCVFQFA 102
           PHH +  P+    C  +FA
Sbjct: 350 PHHQNFGPRHPPDCSMEFA 368


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 19.8 bits (39), Expect = 7.5
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = -3

Query: 169 QWAGRFSRTTDNRW 128
           QW      T++NRW
Sbjct: 363 QWRNNQPSTSNNRW 376


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 19.4 bits (38), Expect = 9.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 248 NHIFRLPYNNN 216
           ++IFRLP  NN
Sbjct: 371 SYIFRLPDENN 381


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,966
Number of Sequences: 336
Number of extensions: 1443
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6155018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)