Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30538
         (324 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc...    27   0.70 
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    25   2.1  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   2.8  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   3.7  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    24   4.9  
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo...    24   6.5  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    24   6.5  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    23   8.6  

>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 226

 Score = 27.1 bits (57), Expect = 0.70
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -3

Query: 259 LNITITFFVYHTIII*SEPKNTIRALYILNQWAGRFSRTTDNRWVKR 119
           +  TIT   Y   +I +    T    YI N+   + ++ TDN W  R
Sbjct: 23  MGTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCR 69


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = -1

Query: 309 LNNHPSIQI*DRTYNTSLILQSHFSFTIQ**YDQNQKIQFARCIY*INGLVVLAGQP--- 139
           LNNH S Q+ D   N+   L   F+F     YD   +   AR    I  ++ L  QP   
Sbjct: 513 LNNHESAQMIDAHINSIFTLAEPFAFDAPDVYDFGDQTITARVKQQIPVMLDLRLQPPPE 572

Query: 138 ITVGLNAFLSG 106
            T  L+  LSG
Sbjct: 573 ETYSLHRRLSG 583


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 77   FCTAFSNSRSPLKNAFNPTVIG 142
            FCTAF    S +K + NP ++G
Sbjct: 1143 FCTAFYGILSAIKGSPNPGLVG 1164


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 7   SASLIQFLPATLHPHHHST 63
           SA LI      LHP HH+T
Sbjct: 424 SAPLISLSSKQLHPRHHNT 442


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 166 WAGRFSRTTDNRWVKRVLEWRP 101
           W+     T   RW+ R L+WRP
Sbjct: 70  WSLSRKATRFYRWLSRSLKWRP 91


>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 311 Y*TIIRPYKFETELITLA*YYNHIFRL 231
           Y  IIR +K E++  +L+    H+F+L
Sbjct: 266 YLNIIREFKLESDYSSLSAIKGHLFKL 292


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 86  AFSNSRSPLKNAFNPTVIGCPAKTTSPLI 172
           A  NS+  L    +  V+GC AK  S LI
Sbjct: 659 ANQNSKKTLDQPTSLLVLGCKAKNVSELI 687


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 104 SPLKNAFNPTVIGCPAKTTSPLI 172
           S L + F+ T+I CP+    P++
Sbjct: 525 STLNDVFSQTIIFCPSLAVPPIL 547


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,260,132
Number of Sequences: 5004
Number of extensions: 22359
Number of successful extensions: 41
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)