Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30538
         (324 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0541 + 4251931-4254141                                           28   1.9  
03_01_0572 + 4218610-4218881,4218991-4219169,4219286-4219464           27   2.6  
03_06_0264 + 32738224-32738553,32739298-32739768,32739864-327400...    27   3.4  
08_02_1197 + 25199614-25199795,25200241-25200308,25200309-252004...    26   5.9  
10_06_0152 - 11280532-11281427,11281501-11281971,11282512-11282569     26   7.8  

>12_01_0541 + 4251931-4254141
          Length = 736

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 25  FLPATLHPHHHSTEPKG 75
           F PA LH HHH + P G
Sbjct: 351 FSPALLHHHHHHSPPPG 367


>03_01_0572 + 4218610-4218881,4218991-4219169,4219286-4219464
          Length = 209

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 18/42 (42%), Positives = 19/42 (45%)
 Frame = -3

Query: 157 RFSRTTDNRWVKRVLEWRPRIGKRSAERP*ARWSDDGGAGWL 32
           RF     NR V  V E  P   K+ AE       DDGGA WL
Sbjct: 162 RFLEKRKNRIV--VAEPLPESEKKEAESSKRAKKDDGGASWL 201


>03_06_0264 +
           32738224-32738553,32739298-32739768,32739864-32740007,
           32740570-32740671,32741758-32741873,32741959-32742028,
           32742308-32742376,32742898-32742948,32743038-32743196
          Length = 503

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -3

Query: 115 LEWRPRIGKRSAERP*AR---WSDDGGAGWLAGTG 20
           LEWRP+ G R+  R   R   +S DGG G   G G
Sbjct: 53  LEWRPKSGLRALRRCEDRLRCFSIDGGGGGGGGGG 87


>08_02_1197 +
           25199614-25199795,25200241-25200308,25200309-25200400,
           25200940-25201019,25201418-25201535,25202371-25202562
          Length = 243

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 196 TIRALYILNQWAGRFSRTTDNRWVKRVLEW 107
           T   + + NQW GR SR   ++  + +L W
Sbjct: 32  TALQMAVENQWGGRDSRAKADQLAESILSW 61


>10_06_0152 - 11280532-11281427,11281501-11281971,11282512-11282569
          Length = 474

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -3

Query: 100 RIGKRSAERP*ARW---SDDGGAGWLAG 26
           R+G+RS ER   R      DGGAG LAG
Sbjct: 89  RLGRRSEERAARRARRPGQDGGAGGLAG 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,916,257
Number of Sequences: 37544
Number of extensions: 139897
Number of successful extensions: 353
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)