Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30538
         (324 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49557| Best HMM Match : RVT_1 (HMM E-Value=0.58)                    27   2.6  
SB_26530| Best HMM Match : RVT_1 (HMM E-Value=0.58)                    27   2.6  
SB_23124| Best HMM Match : AT_hook (HMM E-Value=3.3)                   27   2.6  
SB_23084| Best HMM Match : AT_hook (HMM E-Value=3.3)                   27   2.6  
SB_16102| Best HMM Match : RVT_1 (HMM E-Value=0.00065)                 27   2.6  
SB_2120| Best HMM Match : AT_hook (HMM E-Value=3.3)                    27   2.6  
SB_1327| Best HMM Match : AT_hook (HMM E-Value=3.3)                    27   2.6  
SB_46852| Best HMM Match : AT_hook (HMM E-Value=2.6)                   27   4.6  
SB_45857| Best HMM Match : DUF1274 (HMM E-Value=2.4)                   27   4.6  
SB_43890| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_32772| Best HMM Match : AT_hook (HMM E-Value=2.6)                   27   4.6  
SB_59259| Best HMM Match : AT_hook (HMM E-Value=2.6)                   27   4.6  
SB_36149| Best HMM Match : AT_hook (HMM E-Value=2.6)                   27   4.6  
SB_11455| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_11315| Best HMM Match : AT_hook (HMM E-Value=2.6)                   27   4.6  
SB_59529| Best HMM Match : BPL_C (HMM E-Value=7.5)                     26   6.1  
SB_31590| Best HMM Match : His_leader (HMM E-Value=3.2)                26   6.1  
SB_55887| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.1  
SB_53077| Best HMM Match : SRP54_N (HMM E-Value=1.8)                   26   8.1  
SB_40565| Best HMM Match : DUF1274 (HMM E-Value=6.2)                   26   8.1  

>SB_49557| Best HMM Match : RVT_1 (HMM E-Value=0.58)
          Length = 404

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 169 QWAGRFSRTTDNRWVKRVLEWRPRIGKRSAERP*ARWSD 53
           +W G F R  D+R  K++L      G R   RP  R+ D
Sbjct: 308 RWLGHFCRMDDDRVPKQLLFSELEHGSRPVGRPKLRFKD 346


>SB_26530| Best HMM Match : RVT_1 (HMM E-Value=0.58)
          Length = 359

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 169 QWAGRFSRTTDNRWVKRVLEWRPRIGKRSAERP*ARWSD 53
           +W G F R  D+R  K++L      G R   RP  R+ D
Sbjct: 308 RWLGHFCRMDDDRVPKQLLFSELEHGSRPVGRPKLRFKD 346


>SB_23124| Best HMM Match : AT_hook (HMM E-Value=3.3)
          Length = 203

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 169 QWAGRFSRTTDNRWVKRVLEWRPRIGKRSAERP*ARWSD 53
           +W G F R  D+R  K++L      G R   RP  R+ D
Sbjct: 107 RWLGHFCRMDDDRVPKQLLFSELEHGSRPVGRPKLRFKD 145


>SB_23084| Best HMM Match : AT_hook (HMM E-Value=3.3)
          Length = 249

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 169 QWAGRFSRTTDNRWVKRVLEWRPRIGKRSAERP*ARWSD 53
           +W G F R  D+R  K++L      G R   RP  R+ D
Sbjct: 153 RWLGHFCRMDDDRVPKQLLFSELEHGSRPVGRPKLRFKD 191


>SB_16102| Best HMM Match : RVT_1 (HMM E-Value=0.00065)
          Length = 435

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 169 QWAGRFSRTTDNRWVKRVLEWRPRIGKRSAERP*ARWSD 53
           +W G F R  D+R  K++L      G R   RP  R+ D
Sbjct: 339 RWLGHFCRMDDDRVPKQLLFSELEHGSRPVGRPKLRFKD 377


>SB_2120| Best HMM Match : AT_hook (HMM E-Value=3.3)
          Length = 235

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 169 QWAGRFSRTTDNRWVKRVLEWRPRIGKRSAERP*ARWSD 53
           +W G F R  D+R  K++L      G R   RP  R+ D
Sbjct: 185 RWLGHFCRMDDDRVPKQLLFSELEHGSRPVGRPKLRFKD 223


>SB_1327| Best HMM Match : AT_hook (HMM E-Value=3.3)
          Length = 203

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 169 QWAGRFSRTTDNRWVKRVLEWRPRIGKRSAERP*ARWSD 53
           +W G F R  D+R  K++L      G R   RP  R+ D
Sbjct: 107 RWLGHFCRMDDDRVPKQLLFSELEHGSRPVGRPKLRFKD 145


>SB_46852| Best HMM Match : AT_hook (HMM E-Value=2.6)
          Length = 294

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 169 QWAGRFSRTTDNRWVKRVLEWRPRIGKRSAERP*ARWSD 53
           +W G   R  D+R  K++L      G R A RP  R+ D
Sbjct: 198 RWLGHLCRMDDDRVPKQLLFSELEHGSRPAGRPKLRFKD 236


>SB_45857| Best HMM Match : DUF1274 (HMM E-Value=2.4)
          Length = 288

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 169 QWAGRFSRTTDNRWVKRVLEWRPRIGKRSAERP*ARWSD 53
           +W G   R  D+R  K++L      G R A RP  R+ D
Sbjct: 198 RWLGHLCRMDDDRVPKQLLFSELEHGSRPAGRPKLRFKD 236


>SB_43890| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 169 QWAGRFSRTTDNRWVKRVLEWRPRIGKRSAERP*ARWSD 53
           +W G   R  D+R  K++L      G R A RP  R+ D
Sbjct: 107 RWLGHLCRMDDDRVPKQLLFSELEHGSRPAGRPKLRFKD 145


>SB_32772| Best HMM Match : AT_hook (HMM E-Value=2.6)
          Length = 255

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 169 QWAGRFSRTTDNRWVKRVLEWRPRIGKRSAERP*ARWSD 53
           +W G   R  D+R  K++L      G R A RP  R+ D
Sbjct: 159 RWLGHLCRMDDDRVPKQLLFSELEHGSRPAGRPKLRFKD 197


>SB_59259| Best HMM Match : AT_hook (HMM E-Value=2.6)
          Length = 203

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 169 QWAGRFSRTTDNRWVKRVLEWRPRIGKRSAERP*ARWSD 53
           +W G   R  D+R  K++L      G R A RP  R+ D
Sbjct: 107 RWLGHLCRMDDDRVPKQLLFSELEHGSRPAGRPKLRFKD 145


>SB_36149| Best HMM Match : AT_hook (HMM E-Value=2.6)
          Length = 294

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 169 QWAGRFSRTTDNRWVKRVLEWRPRIGKRSAERP*ARWSD 53
           +W G   R  D+R  K++L      G R A RP  R+ D
Sbjct: 198 RWLGHLCRMDDDRVPKQLLFSELEHGSRPAGRPKLRFKD 236


>SB_11455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -2

Query: 254 YYNHIFRLPYNNNMIRTKKYNSRAVYIKSMGWS 156
           Y+N ++ + +++N +   K+ S  VYI    W+
Sbjct: 157 YWNQVYIVKHHSNQVYIDKHYSNQVYIDKHYWN 189


>SB_11315| Best HMM Match : AT_hook (HMM E-Value=2.6)
          Length = 294

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 169 QWAGRFSRTTDNRWVKRVLEWRPRIGKRSAERP*ARWSD 53
           +W G   R  D+R  K++L      G R A RP  R+ D
Sbjct: 198 RWLGHLCRMDDDRVPKQLLFSELEHGSRPAGRPKLRFKD 236


>SB_59529| Best HMM Match : BPL_C (HMM E-Value=7.5)
          Length = 350

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
 Frame = +2

Query: 71  RAFCTAFSNSRSPLKNAFN-PTVIGC---PAKTTSPLI*YIQRANCIFW 205
           +A C     +  P   A N P  I C   P+ T+ P +   ++A+C+ W
Sbjct: 21  KAHCLIRDQAPPPTPQACNSPLAISCQQTPSLTSDPRVQVPRKAHCLIW 69


>SB_31590| Best HMM Match : His_leader (HMM E-Value=3.2)
          Length = 104

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 269 ITLA*YYNHIFRLPYNNNMIR 207
           IT   +Y+H+ R PYN++M R
Sbjct: 35  ITRIPFYHHMTRTPYNHHMTR 55


>SB_55887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 169 QWAGRFSRTTDNRWVKRVLEWRPRIGKRSAERP*ARWSD 53
           +W G   R  D+R  K++L      G R+  RP  R+ D
Sbjct: 198 RWLGHLCRMDDDRVPKQLLFSELEQGSRAVGRPKLRFKD 236


>SB_53077| Best HMM Match : SRP54_N (HMM E-Value=1.8)
          Length = 533

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -3

Query: 160 GRFSRTTDNRWVKRVLEWRPRIGKRS 83
           G F   T N+W+++ ++W   I K++
Sbjct: 336 GSFPCETQNKWLQKYVKWSVSINKKA 361


>SB_40565| Best HMM Match : DUF1274 (HMM E-Value=6.2)
          Length = 294

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 169 QWAGRFSRTTDNRWVKRVLEWRPRIGKRSAERP*ARWSD 53
           +W G   R  D+R  K++L      G R+  RP  R+ D
Sbjct: 198 RWLGHLCRMDDDRVPKQLLFSELEQGSRAVGRPKLRFKD 236


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,336,200
Number of Sequences: 59808
Number of extensions: 170770
Number of successful extensions: 388
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 438034835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)