Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30538
         (324 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13709-1|CAA74038.1|  313|Homo sapiens caudal-type homeobox prot...    23   7.5  
BC014461-1|AAH14461.1|  313|Homo sapiens caudal type homeobox tr...    23   7.5  
AL591024-2|CAH70633.1|  313|Homo sapiens caudal type homeobox tr...    23   7.5  
AJ278431-1|CAB94779.1|  313|Homo sapiens caudal type homeobox tr...    23   7.5  
AF007886-1|AAD05200.1|  313|Homo sapiens caudal-type homeobox pr...    23   7.5  
U51096-1|AAB40603.1|  311|Homo sapiens homeobox protein Cdx2 pro...    23   7.5  

>Y13709-1|CAA74038.1|  313|Homo sapiens caudal-type homeobox protein
           2 protein.
          Length = 313

 Score = 23.4 bits (48), Expect(2) = 7.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 31  PATLHPHHH 57
           PA  HPHHH
Sbjct: 110 PADYHPHHH 118



 Score = 23.0 bits (47), Expect(2) = 7.5
 Identities = 7/15 (46%), Positives = 7/15 (46%)
 Frame = +1

Query: 43  HPHHHSTEPKGVLHC 87
           HPHHH   P     C
Sbjct: 118 HPHHHPHHPAAAPSC 132


>BC014461-1|AAH14461.1|  313|Homo sapiens caudal type homeobox
           transcription factor 2 protein.
          Length = 313

 Score = 23.4 bits (48), Expect(2) = 7.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 31  PATLHPHHH 57
           PA  HPHHH
Sbjct: 110 PADYHPHHH 118



 Score = 23.0 bits (47), Expect(2) = 7.5
 Identities = 7/15 (46%), Positives = 7/15 (46%)
 Frame = +1

Query: 43  HPHHHSTEPKGVLHC 87
           HPHHH   P     C
Sbjct: 118 HPHHHPHHPAAAPSC 132


>AL591024-2|CAH70633.1|  313|Homo sapiens caudal type homeobox
           transcription factor 2 protein.
          Length = 313

 Score = 23.4 bits (48), Expect(2) = 7.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 31  PATLHPHHH 57
           PA  HPHHH
Sbjct: 110 PADYHPHHH 118



 Score = 23.0 bits (47), Expect(2) = 7.5
 Identities = 7/15 (46%), Positives = 7/15 (46%)
 Frame = +1

Query: 43  HPHHHSTEPKGVLHC 87
           HPHHH   P     C
Sbjct: 118 HPHHHPHHPAAAPSC 132


>AJ278431-1|CAB94779.1|  313|Homo sapiens caudal type homeobox
           transcription factor protein.
          Length = 313

 Score = 23.4 bits (48), Expect(2) = 7.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 31  PATLHPHHH 57
           PA  HPHHH
Sbjct: 110 PADYHPHHH 118



 Score = 23.0 bits (47), Expect(2) = 7.5
 Identities = 7/15 (46%), Positives = 7/15 (46%)
 Frame = +1

Query: 43  HPHHHSTEPKGVLHC 87
           HPHHH   P     C
Sbjct: 118 HPHHHPHHPAAAPSC 132


>AF007886-1|AAD05200.1|  313|Homo sapiens caudal-type homeobox
           protein 2/3 protein.
          Length = 313

 Score = 23.4 bits (48), Expect(2) = 7.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 31  PATLHPHHH 57
           PA  HPHHH
Sbjct: 110 PADYHPHHH 118



 Score = 23.0 bits (47), Expect(2) = 7.5
 Identities = 7/15 (46%), Positives = 7/15 (46%)
 Frame = +1

Query: 43  HPHHHSTEPKGVLHC 87
           HPHHH   P     C
Sbjct: 118 HPHHHPHHPAAAPSC 132


>U51096-1|AAB40603.1|  311|Homo sapiens homeobox protein Cdx2
           protein.
          Length = 311

 Score = 23.4 bits (48), Expect(2) = 7.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 31  PATLHPHHH 57
           PA  HPHHH
Sbjct: 108 PADYHPHHH 116



 Score = 23.0 bits (47), Expect(2) = 7.5
 Identities = 7/15 (46%), Positives = 7/15 (46%)
 Frame = +1

Query: 43  HPHHHSTEPKGVLHC 87
           HPHHH   P     C
Sbjct: 116 HPHHHPHHPAAAPSC 130


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,708,065
Number of Sequences: 237096
Number of extensions: 731228
Number of successful extensions: 4937
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4937
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1627597384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)