Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30538
(324 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical ... 45 1e-05
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 44 2e-05
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 44 2e-05
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 44 2e-05
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 44 2e-05
U88178-6|ABA03112.1| 312|Caenorhabditis elegans Hypothetical pr... 29 1.0
AF022973-2|AAC25800.2| 527|Caenorhabditis elegans Hypothetical ... 27 3.1
AF022973-1|AAT81194.1| 513|Caenorhabditis elegans Hypothetical ... 27 3.1
Z81517-2|CAB04209.1| 973|Caenorhabditis elegans Hypothetical pr... 26 5.4
Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical pr... 26 5.4
Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical pr... 26 5.4
Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical pr... 26 5.4
Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical pr... 26 5.4
AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin pr... 26 5.4
AF003145-3|AAB57717.1| 751|Caenorhabditis elegans Cpeb polya bi... 26 5.4
>AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical
protein Y51F10.8 protein.
Length = 204
Score = 44.8 bits (101), Expect = 1e-05
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = -3
Query: 166 WAGRFSRTTDNRWVKRVLEWRPRIGKRSAERP*ARWSD 53
WAG +R TD RW + +W PR KR RP RW+D
Sbjct: 125 WAGHVARRTDGRWTTLMNDWCPRDEKRPVGRPPMRWND 162
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 44.4 bits (100), Expect = 2e-05
Identities = 18/38 (47%), Positives = 21/38 (55%)
Frame = -3
Query: 166 WAGRFSRTTDNRWVKRVLEWRPRIGKRSAERP*ARWSD 53
WAG +R D RW + EWRP KR RP RW+D
Sbjct: 814 WAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTD 851
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 44.4 bits (100), Expect = 2e-05
Identities = 18/38 (47%), Positives = 21/38 (55%)
Frame = -3
Query: 166 WAGRFSRTTDNRWVKRVLEWRPRIGKRSAERP*ARWSD 53
WAG +R D RW + EWRP KR RP RW+D
Sbjct: 989 WAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTD 1026
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 44.4 bits (100), Expect = 2e-05
Identities = 18/38 (47%), Positives = 21/38 (55%)
Frame = -3
Query: 166 WAGRFSRTTDNRWVKRVLEWRPRIGKRSAERP*ARWSD 53
WAG +R D RW + EWRP KR RP RW+D
Sbjct: 728 WAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTD 765
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 44.4 bits (100), Expect = 2e-05
Identities = 18/38 (47%), Positives = 21/38 (55%)
Frame = -3
Query: 166 WAGRFSRTTDNRWVKRVLEWRPRIGKRSAERP*ARWSD 53
WAG +R D RW + EWRP KR RP RW+D
Sbjct: 340 WAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTD 377
>U88178-6|ABA03112.1| 312|Caenorhabditis elegans Hypothetical
protein W09C3.8 protein.
Length = 312
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = -3
Query: 172 NQWAGRFSRTTDNRWVKRVLEWRP---RIGKRSAERP*ARWSDD 50
+++AG R NRW K EW P + KR+ RW+ D
Sbjct: 214 SRFAGHILRRDPNRWTKICTEWDPSHNKNWKRAVGGQKKRWAKD 257
>AF022973-2|AAC25800.2| 527|Caenorhabditis elegans Hypothetical
protein F25G6.7a protein.
Length = 527
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Frame = +1
Query: 13 SLIQFLPATLHP--HHHSTEPKGVL 81
+LI FLP+ LH H+HSTE G+L
Sbjct: 314 TLIMFLPSYLHDVHHYHSTE-NGIL 337
>AF022973-1|AAT81194.1| 513|Caenorhabditis elegans Hypothetical
protein F25G6.7b protein.
Length = 513
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Frame = +1
Query: 13 SLIQFLPATLHP--HHHSTEPKGVL 81
+LI FLP+ LH H+HSTE G+L
Sbjct: 300 TLIMFLPSYLHDVHHYHSTE-NGIL 323
>Z81517-2|CAB04209.1| 973|Caenorhabditis elegans Hypothetical
protein F28B1.2 protein.
Length = 973
Score = 26.2 bits (55), Expect = 5.4
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Frame = +2
Query: 89 FSNSRSPLKNAFNPTVIGCPAKTTSPLI*Y-----IQRANCIFWF*SYYYCMVNEKCDCN 253
FS + P++ + +I C K +P I Y IQ N Y + +KC CN
Sbjct: 259 FSENNPPIEVNYMGPIIRCINKPLNPYIYYWVANGIQLINPAGACVKYSEPVEMQKCKCN 318
Query: 254 IKL 262
+KL
Sbjct: 319 VKL 321
>Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical protein
F15G9.4b protein.
Length = 5198
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 116 NAFNPTVIGCPAK-TTSPLI*YIQRANCI 199
N+ NP+ + CPAK + SP I +++ N I
Sbjct: 2491 NSGNPSTLHCPAKGSPSPTITWLKDGNAI 2519
>Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical protein
F15G9.4a protein.
Length = 5175
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 116 NAFNPTVIGCPAK-TTSPLI*YIQRANCI 199
N+ NP+ + CPAK + SP I +++ N I
Sbjct: 2491 NSGNPSTLHCPAKGSPSPTITWLKDGNAI 2519
>Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical protein
F15G9.4b protein.
Length = 5198
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 116 NAFNPTVIGCPAK-TTSPLI*YIQRANCI 199
N+ NP+ + CPAK + SP I +++ N I
Sbjct: 2491 NSGNPSTLHCPAKGSPSPTITWLKDGNAI 2519
>Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical protein
F15G9.4a protein.
Length = 5175
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 116 NAFNPTVIGCPAK-TTSPLI*YIQRANCI 199
N+ NP+ + CPAK + SP I +++ N I
Sbjct: 2491 NSGNPSTLHCPAKGSPSPTITWLKDGNAI 2519
>AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin
precursor protein.
Length = 5198
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 116 NAFNPTVIGCPAK-TTSPLI*YIQRANCI 199
N+ NP+ + CPAK + SP I +++ N I
Sbjct: 2491 NSGNPSTLHCPAKGSPSPTITWLKDGNAI 2519
>AF003145-3|AAB57717.1| 751|Caenorhabditis elegans Cpeb polya
binding family protein 3 protein.
Length = 751
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 92 SNSRSPLKNAFNPTVIGCPAKTTSPLI*YIQ 184
+NS +A P ++G PA+T S L YIQ
Sbjct: 601 NNSIPHFPSAGFPIIVGAPAQTLSALYGYIQ 631
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,941,668
Number of Sequences: 27780
Number of extensions: 126052
Number of successful extensions: 280
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -