Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30538
         (324 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   0.11 
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    24   0.40 
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    24   0.40 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   0.40 
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   3.7  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   4.9  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    20   8.6  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect(2) = 0.11
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 1   GFSASLIQFLPATLHPHHH 57
           G   S   FLP + HPH H
Sbjct: 303 GVYPSTAGFLPPSYHPHQH 321



 Score = 20.6 bits (41), Expect(2) = 0.11
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 43  HPHHHSTEPKGVLH 84
           H HHH T+    LH
Sbjct: 352 HHHHHQTQSLQHLH 365


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.2 bits (50), Expect = 0.40
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 251 YNHIFRLPYNNNMIRTKKYNSRAVY 177
           +N+ ++  YNNN      YN +  Y
Sbjct: 90  HNNNYKYNYNNNNYNNNNYNKKLYY 114


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.2 bits (50), Expect = 0.40
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 251 YNHIFRLPYNNNMIRTKKYNSRAVY 177
           +N+ ++  YNNN      YN +  Y
Sbjct: 90  HNNNYKYNYNNNNYNNNNYNKKLYY 114


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.2 bits (50), Expect = 0.40
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -2

Query: 227 YNNNMIRTKKYNSRAVYIKSM 165
           YNNN + TKK+N++   ++++
Sbjct: 374 YNNNDLDTKKWNNKISALRAL 394


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 248 NHIFRLPYNNNMIRTKKYNS 189
           N+ ++  YNNN      YN+
Sbjct: 326 NNNYKYNYNNNNYNNNNYNN 345


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 276 GLKFVWTD 299
           GLKF WTD
Sbjct: 366 GLKFQWTD 373


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 251 YNHIFRLPYNNNMIRTKKY 195
           YN+  +  YNNN    K Y
Sbjct: 98  YNYNNKYNYNNNNYNKKLY 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,448
Number of Sequences: 438
Number of extensions: 1837
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7093251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)