Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30538
         (324 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02290.1 68414.m00171 expressed protein                             26   6.7  
At5g55830.1 68418.m06957 lectin protein kinase, putative similar...    25   8.8  
At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1) (P...    25   8.8  
At1g64960.1 68414.m07363 expressed protein                             25   8.8  
At1g43630.1 68414.m05009 expressed protein                             25   8.8  

>At1g02290.1 68414.m00171 expressed protein
          Length = 443

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +1

Query: 49  HHHSTEPKGVLHCV 90
           HHH T PKGVL  V
Sbjct: 249 HHHQTLPKGVLKLV 262


>At5g55830.1 68418.m06957 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 681

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 312 LLNNHPSIQI*DRTYNTSLILQSHFSFTIQ 223
           ++ N+P I+  D   NT+    +HFSFT+Q
Sbjct: 72  VIYNNP-IRFYDPDSNTTASFSTHFSFTVQ 100


>At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1)
           (PRCD) identical to cDNA proteasome subunit prcd
           GI:2511593
          Length = 233

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = -3

Query: 265 H*LNITITFFVYHTIII*SEPKNTIRALYILNQWAGRFSRTTDNRWVKR 119
           H +  TI    Y+  ++      T   +Y+ N+ + + ++ TDN +V R
Sbjct: 9   HSMGTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCR 57


>At1g64960.1 68414.m07363 expressed protein
          Length = 1168

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 126 LNAFLSGDRELENAVQNALR 67
           LN+ LSGD+ LEN  +  LR
Sbjct: 589 LNSVLSGDKLLENQTEGLLR 608


>At1g43630.1 68414.m05009 expressed protein
          Length = 383

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 224 NNNMIRTKKYNSRAVYIKSMGWS 156
           N +  R K +N    YI+S+ WS
Sbjct: 177 NRSFTRNKDHNQHIGYIRSLSWS 199


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,469,445
Number of Sequences: 28952
Number of extensions: 113473
Number of successful extensions: 255
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 360538848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)