Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30536
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.03 |||microfibrillar-associated protein family protein|...    52   9e-08
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    29   0.76 
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   7.0  
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p...    26   7.0  
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    25   9.3  

>SPAC1782.03 |||microfibrillar-associated protein family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 52.0 bits (119), Expect = 9e-08
 Identities = 24/57 (42%), Positives = 40/57 (70%), Gaps = 2/57 (3%)
 Frame = +3

Query: 12  EEDVFKQDFSGPTLDDHFDKTVLPKVMQVKK--FGRSGRTKYTHLVDQDTTEFDSAW 176
           E+ V K+D+S  T  +  +K +LPK MQ++   F ++G+T++THL ++DTT+  SAW
Sbjct: 269 EDIVSKRDYSEATEGEVLNKDLLPKPMQIRGDLFAKAGQTRWTHLANEDTTKEGSAW 325


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 14/63 (22%), Positives = 32/63 (50%)
 Frame = +3

Query: 90  MQVKKFGRSGRTKYTHLVDQDTTEFDSAWSNETSAARLTNFRGGMKQVFEKPSAKGSTMF 269
           +++K   RSG+     ++   T E+D+ +  +   +R++ FR    ++  K + +G+   
Sbjct: 492 LEIKHVSRSGKANI-EVIPAPTEEYDNLFGPDDFQSRISAFRKARSKLRAKENEEGNHSN 550

Query: 270 DTC 278
            TC
Sbjct: 551 ATC 553


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 16/33 (48%), Positives = 17/33 (51%)
 Frame = -1

Query: 293 PLTSLTGVKHCASLRRRFLEYLFHSPAEVSQSG 195
           P  +LTG K  AS    FL  LFH  A  S SG
Sbjct: 264 PTIALTGSKFLASCSCFFLSALFHDFAYWSISG 296


>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -1

Query: 749 YMDHLVTGHQHWKSN*RKPIFWH 681
           Y   L TG  HW  + R   FWH
Sbjct: 334 YKSELDTGILHWSPSHRSEDFWH 356


>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 223 IPPRKLVSLAAEVSLLQAESNSVV 152
           +PP K+  +   VSLL++E NS++
Sbjct: 307 LPPTKMKDIDYFVSLLESEQNSLI 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,346,950
Number of Sequences: 5004
Number of extensions: 68813
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)