Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30536
         (785 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0445 - 10351483-10351606,10351987-10353170                       88   9e-18
02_02_0539 - 11315788-11315841,11316620-11316700,11316728-11317711     43   2e-04
02_02_0526 + 11185825-11186832,11187795-11187869                       39   0.005
08_02_1458 - 27270834-27271320,27271752-27271961,27272627-272736...    30   1.8  
08_01_0841 + 8223768-8223871,8227749-8228745,8228779-8228828,822...    29   5.5  
09_02_0587 - 10948888-10949124,10949281-10949393,10949830-109502...    28   9.7  

>02_02_0445 - 10351483-10351606,10351987-10353170
          Length = 435

 Score = 87.8 bits (208), Expect = 9e-18
 Identities = 42/84 (50%), Positives = 59/84 (70%), Gaps = 1/84 (1%)
 Frame = +3

Query: 12  EEDVFKQDFSGPTLDDHFDKTVLPKVMQVKKFGRSGRTKYTHLVDQDTTEFDSAW-SNET 188
           ++D++ +DFS PT +D  DK++LPKVMQVK FGRSGRTK+THLV++DTT++++ W +N  
Sbjct: 342 KDDIYARDFSAPTGEDKMDKSILPKVMQVKHFGRSGRTKWTHLVNEDTTDWNAPWATNGP 401

Query: 189 SAARLTNFRGGMKQVFEKPSAKGS 260
             A+      GM     KP  KGS
Sbjct: 402 LRAKYNAKMAGMNAPIAKP--KGS 423


>02_02_0539 - 11315788-11315841,11316620-11316700,11316728-11317711
          Length = 372

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 23/47 (48%), Positives = 31/47 (65%)
 Frame = +3

Query: 18  DVFKQDFSGPTLDDHFDKTVLPKVMQVKKFGRSGRTKYTHLVDQDTT 158
           +++++DFSGPT     DK      M VK FGR G  K+THLV++DTT
Sbjct: 312 EIYRRDFSGPT---GLDK------MDVKHFGRRGGRKWTHLVNEDTT 349


>02_02_0526 + 11185825-11186832,11187795-11187869
          Length = 360

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 16/28 (57%), Positives = 23/28 (82%)
 Frame = +3

Query: 18  DVFKQDFSGPTLDDHFDKTVLPKVMQVK 101
           +++++DFSGPT  D  D +VLPKVMQV+
Sbjct: 311 EIYRRDFSGPTGLDKMDVSVLPKVMQVE 338


>08_02_1458 -
           27270834-27271320,27271752-27271961,27272627-27273624,
           27274099-27274195,27274278-27274393,27274465-27274590,
           27275123-27275233,27275347-27275428,27275844-27275989,
           27276457-27276650,27277277-27277388,27277869-27278001,
           27278295-27278437,27278488-27278562,27278830-27278937,
           27279072-27279197,27279752-27279836,27280358-27280440,
           27280545-27280625,27280709-27280789,27281960-27282034,
           27282112-27282498,27282902-27283036
          Length = 1396

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +3

Query: 51  LDDHFDKTVLPKVMQVKKFGRSGRTK 128
           L +++   VLPKV++ K+  +SGRTK
Sbjct: 416 LHENYQLYVLPKVLESKRMAKSGRTK 441


>08_01_0841 +
           8223768-8223871,8227749-8228745,8228779-8228828,
           8228896-8230396
          Length = 883

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +3

Query: 66  DKTVLPKVMQVKKFGRSGRTKYTHLVDQDTTE--FDS-AWSNETSAARLTN-FRGGMKQV 233
           DKT  PKV  V     SG T+ + +  +   +  +DS  W   +    +T  F+  MKQ+
Sbjct: 182 DKTCAPKVTAVVGMFGSGSTRVSEIYKRHKADKKYDSYVWIELSQDVNVTKVFKDMMKQL 241

Query: 234 FEKPSAK 254
           F+  S++
Sbjct: 242 FDDSSSQ 248


>09_02_0587 -
           10948888-10949124,10949281-10949393,10949830-10950293,
           10951223-10951766,10951902-10951971
          Length = 475

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
 Frame = -2

Query: 778 WNHFHANPWITWTIW*PV--TNTG 713
           WN FH   ++ W  W PV   NTG
Sbjct: 138 WNEFHEALFVAWASWVPVCLLNTG 161


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,953,202
Number of Sequences: 37544
Number of extensions: 426833
Number of successful extensions: 844
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)