Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30536
         (785 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27494| Best HMM Match : MFAP1_C (HMM E-Value=0)                     96   2e-20
SB_11116| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_2814| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_44424| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_34539| Best HMM Match : SIR2 (HMM E-Value=1.7)                      29   4.3  
SB_33228| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_3166| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.6  
SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1)                28   9.9  

>SB_27494| Best HMM Match : MFAP1_C (HMM E-Value=0)
          Length = 808

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 41/61 (67%), Positives = 51/61 (83%)
 Frame = +3

Query: 6   DKEEDVFKQDFSGPTLDDHFDKTVLPKVMQVKKFGRSGRTKYTHLVDQDTTEFDSAWSNE 185
           D+E+ V+K++F+ PTL+DHFDKT++PKVMQVK FGRSGRTKYTHLVDQDTT   + W   
Sbjct: 433 DEEDTVYKRNFAQPTLEDHFDKTIVPKVMQVKNFGRSGRTKYTHLVDQDTTNEKTDWLTV 492

Query: 186 T 188
           T
Sbjct: 493 T 493


>SB_11116| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1661

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
 Frame = +1

Query: 70   RQFYQRLCKSRSLD---VPVVRSTHIWSIKTLRSSIPLGAMKPQQPD*LTSAGE*NKYSR 240
            R F    C S S +   VPV  ++ +   K   + IPL ++ P+ P     A E      
Sbjct: 1211 RAFLVTTCASTSTESPAVPVKPASTLTFAKNAPTPIPLTSVAPESPQASAKATEAKLRVA 1270

Query: 241  NLR-RREAQCLTPVK--LVKGTLTLSSVRRFNTVALDA 345
             L  +R+A   TP+K  L++  L+  S R F T  L++
Sbjct: 1271 QLHSKRKATISTPIKIDLLEQELSSHSDREFVTSLLNS 1308


>SB_2814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = -1

Query: 182 IAPSGIELRSVLIDQMCVLRTTGTSKLLDLHNLW*NCLVKMIIQRRTREVL 30
           +AP G+ +++ ++ ++  LRT+ T     L +     L    + RRT+E+L
Sbjct: 14  VAPQGVPVQNTMLAEVLSLRTSATQYTTVLSDYMARTLKLFYVIRRTKELL 64


>SB_44424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1350

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +3

Query: 9    KEEDVFKQDFS--GPTLDDHFDKTVLPKVMQVKKFGRSGRTK 128
            K+ED+F QDF+       D F    LP++++ + FGR G +K
Sbjct: 1240 KKEDIF-QDFTQTSAVFVDPFSLEELPRMVEGRTFGRFGSSK 1280


>SB_34539| Best HMM Match : SIR2 (HMM E-Value=1.7)
          Length = 1384

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +3

Query: 9   KEEDVFKQDFS--GPTLDDHFDKTVLPKVMQVKKFGRSGRTK 128
           K+ED+F QDF+       D F    LP++++ + FGR G +K
Sbjct: 589 KKEDIF-QDFTQTSAVFVDPFSLEELPRMVEGRTFGRFGSSK 629



 Score = 27.9 bits (59), Expect = 9.9
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = +3

Query: 93   QVKKFGRSGRTKYTHLVDQDTTEFDSAWSNETSAARLTNFRGGMKQVFEKPSAKGST 263
            +V  F      + T L+++DT + +S  S  TSAA    F  G+ + F  P A  ST
Sbjct: 1263 EVDSFVSCEHCESTDLIEKDTADANSLLSIVTSAAMPATFPSGL-EGFSTPVAGYST 1318


>SB_33228| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 50

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +1

Query: 229 KYSRNLRRREAQCLTPVKLVKGTLTLSSV-RRFNTVALD 342
           + +  +R+R + C  PV+++ GT+  SSV RR+ TV  D
Sbjct: 9   RVTERVRKRSSVCTQPVQVI-GTIMRSSVSRRYKTVRRD 46


>SB_3166| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 585

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 75  VLPKVMQVKKFGRSGRTKYTHLVDQDTTEFDSAW 176
           + PK++ V  F R+      H V Q   EFDS W
Sbjct: 298 IFPKLLNVVCFSRTLDNVGNHFVIQTLLEFDSVW 331


>SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1)
          Length = 890

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = +3

Query: 93  QVKKFGRSGRTKYTHLVDQDTTEFDSAWSNETSAARLTNFRGGMKQVFEKPSAKGST 263
           +V  F      + T L+++DT + +S  S  TSAA    F  G+ + F  P A  ST
Sbjct: 384 EVDSFVSCEHCESTDLIEKDTADANSLLSIVTSAAMPATFPSGL-EGFSTPVAGYST 439


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,634,651
Number of Sequences: 59808
Number of extensions: 519800
Number of successful extensions: 1117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)