Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30536
         (785 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79755-7|CAB02103.1|  466|Caenorhabditis elegans Hypothetical pr...    98   7e-21
AL033536-2|CAA22139.1|  319|Caenorhabditis elegans Hypothetical ...    30   2.2  

>Z79755-7|CAB02103.1|  466|Caenorhabditis elegans Hypothetical
           protein F43G9.10 protein.
          Length = 466

 Score = 97.9 bits (233), Expect = 7e-21
 Identities = 43/86 (50%), Positives = 62/86 (72%), Gaps = 2/86 (2%)
 Frame = +3

Query: 3   LDKEEDVFKQDFSGPTLDDHFDKTVLPKVMQVKKFGRSGRTKYTHLVDQDTTEFDSAW-- 176
           LD+E++V K++F+  T DD FDKT+LPKVMQVK FG++ RTKYTHL ++DTT+    W  
Sbjct: 377 LDEEDEVLKRNFAEATNDDQFDKTILPKVMQVKNFGKASRTKYTHLTEEDTTDHQGVWAS 436

Query: 177 SNETSAARLTNFRGGMKQVFEKPSAK 254
           +N+ ++   T   GG + VFE+P+ K
Sbjct: 437 TNQLNSQFSTKRAGGSRPVFERPATK 462


>AL033536-2|CAA22139.1|  319|Caenorhabditis elegans Hypothetical
           protein Y53C10A.5 protein.
          Length = 319

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 3   LDKEEDVFKQDFSGPTLDDHFDKTVLPKVMQ 95
           L KEE+ FK     PTLD+  D   LP +++
Sbjct: 25  LKKEEERFKSPDPAPTLDEEVDIDTLPSMLE 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,350,525
Number of Sequences: 27780
Number of extensions: 384548
Number of successful extensions: 878
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)