Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30535
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    25   9.5  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   9.5  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   9.5  

>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = -1

Query: 426 RSTRVSTRISATE--SSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT*GSRR 253
           +S  +   +S+T   +S++  A T+     E TTE+ S   + A +   A RK    SR+
Sbjct: 441 KSKHIDDDLSSTVHINSLSGSAGTSDFGLVEETTESASAYFLEARRRRNAVRKDPKLSRQ 500

Query: 252 PPIATVL 232
           P +  +L
Sbjct: 501 PQVGRLL 507


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = -1

Query: 411  STRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT*GSRRPPIAT 238
            ST  SAT SS +S A   A+  G ST+   +     ++  + A+   T GS    +AT
Sbjct: 965  STAASATGSSTSSIA--TASVSGSSTSSVATASATDSSTSSIAAASVT-GSSTSSVAT 1019


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 702 KGLELGCLEVWD*LIIKAALSRLLKPSTYTSVFS 601
           K LE    E +D  I   ALS+++ P    S+F+
Sbjct: 759 KSLEASLYEKYDLCITGRALSQIINPDVIMSIFT 792


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,747,755
Number of Sequences: 5004
Number of extensions: 48470
Number of successful extensions: 131
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)