Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30535
         (798 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57980| Best HMM Match : Ribosomal_L20 (HMM E-Value=2.2)             30   2.5  
SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_27033| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_42316| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  

>SB_57980| Best HMM Match : Ribosomal_L20 (HMM E-Value=2.2)
          Length = 472

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 477 AKTSSYPCCGSPQKHYKIIFIKGPNSSHSYCPHKFLSNHKTKRRHSYMC 623
           +KTS+     + +K    I  K  N+ H+ CP   +S  K   RHS +C
Sbjct: 136 SKTSNNSITNAFEKTMPSIENKHDNNKHASCPSIKISKCKENHRHSRIC 184


>SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 532

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +2

Query: 368 ASEVMLDSVADMRVDTLVLLLYRNTSMFTYLPQNQLSKDFLVSL 499
           A +V  +   D++V  L  LL  NTSMF+   QN +SK  ++ L
Sbjct: 266 ARKVFTNKTQDIKVSKLTRLLVANTSMFS---QNLVSKSAVIKL 306


>SB_27033| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 960

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/71 (22%), Positives = 34/71 (47%)
 Frame = -1

Query: 450 NIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 271
           N D+F  +++ + + R S T+S+I   +    +A    TT++++I +    K +    + 
Sbjct: 493 NKDIFRKQKTVQNTFRTSKTKSNIAELSMAVKSAARAKTTQSQNITKNKEEKASEGKGER 552

Query: 270 T*GSRRPPIAT 238
              + RP   T
Sbjct: 553 KKNTSRPSSVT 563


>SB_42316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 749

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +3

Query: 663 INPKL-PSNPIQGPSKNRGKF*LSIQIIQNPKKGILGWVP--IWAGRP 797
           INPKL P    +GP K      +S+ I  NP +G+  + P   W  RP
Sbjct: 512 INPKLKPLFHHEGPMKTTPSCPVSLAISFNPAQGVQSYAPSQSWCPRP 559


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,626,942
Number of Sequences: 59808
Number of extensions: 370416
Number of successful extensions: 1112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)