Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30535
         (798 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y09703-1|CAA70874.1|  586|Homo sapiens MEMA protein.                   33   1.2  
AK223612-1|BAD97332.1|  717|Homo sapiens pinin, desmosome associ...    33   1.2  
AF195139-1|AAG33941.1|  717|Homo sapiens pinin protein.                31   4.8  
Y10351-1|CAA71377.1|  711|Homo sapiens nuclear protein SDK3 prot...    31   6.4  
U77718-1|AAB48304.1|  743|Homo sapiens pinin protein.                  31   6.4  
U59479-1|AAB03391.1|   99|Homo sapiens neutrophil protein protein.     31   6.4  
BC062602-1|AAH62602.1|  717|Homo sapiens pinin, desmosome associ...    31   6.4  
AF112222-1|AAF17209.1|  717|Homo sapiens nuclear protein SDK3 pr...    31   6.4  

>Y09703-1|CAA70874.1|  586|Homo sapiens MEMA protein.
          Length = 586

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
 Frame = -3

Query: 364 NRCRRQGRVHHRDRVHQKSV--RRQGKCCLQKGHL-----GIQKTTNSNSSVSAADRGRA 206
           +R R +GR H+RDR H++SV  +R+    L++ H      G + T  S    S +DR R+
Sbjct: 500 SRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGGGSRDTKGSKDKNSRSDRKRS 559


>AK223612-1|BAD97332.1|  717|Homo sapiens pinin, desmosome
           associated protein variant protein.
          Length = 717

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
 Frame = -3

Query: 364 NRCRRQGRVHHRDRVHQKSV--RRQGKCCLQKGHL-----GIQKTTNSNSSVSAADRGRA 206
           +R R +GR H+RDR H++SV  +R+    L++ H      G + T  S    S +DR R+
Sbjct: 631 SRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGGGSRDTKGSKDKNSRSDRKRS 690


>AF195139-1|AAG33941.1|  717|Homo sapiens pinin protein.
          Length = 717

 Score = 31.1 bits (67), Expect = 4.8
 Identities = 16/49 (32%), Positives = 30/49 (61%)
 Frame = -3

Query: 364 NRCRRQGRVHHRDRVHQKSVRRQGKCCLQKGHLGIQKTTNSNSSVSAAD 218
           +R R +GR H+RDR H++SV R+     ++   G++++  S+   S+ D
Sbjct: 631 SRSRSRGRGHNRDRKHRRSVDRK-----RRDTSGLERSPKSSKGGSSRD 674


>Y10351-1|CAA71377.1|  711|Homo sapiens nuclear protein SDK3
           protein.
          Length = 711

 Score = 30.7 bits (66), Expect = 6.4
 Identities = 16/49 (32%), Positives = 30/49 (61%)
 Frame = -3

Query: 364 NRCRRQGRVHHRDRVHQKSVRRQGKCCLQKGHLGIQKTTNSNSSVSAAD 218
           +R R +GR H+RDR H++SV R+     ++   G++++  S+   S+ D
Sbjct: 625 SRSRSRGRGHNRDRKHRRSVDRK-----RRDTSGLERSHKSSKGGSSRD 668


>U77718-1|AAB48304.1|  743|Homo sapiens pinin protein.
          Length = 743

 Score = 30.7 bits (66), Expect = 6.4
 Identities = 16/49 (32%), Positives = 30/49 (61%)
 Frame = -3

Query: 364 NRCRRQGRVHHRDRVHQKSVRRQGKCCLQKGHLGIQKTTNSNSSVSAAD 218
           +R R +GR H+RDR H++SV R+     ++   G++++  S+   S+ D
Sbjct: 657 SRSRSRGRGHNRDRKHRRSVDRK-----RRDTSGLERSHKSSKGGSSRD 700


>U59479-1|AAB03391.1|   99|Homo sapiens neutrophil protein protein.
          Length = 99

 Score = 30.7 bits (66), Expect = 6.4
 Identities = 16/49 (32%), Positives = 30/49 (61%)
 Frame = -3

Query: 364 NRCRRQGRVHHRDRVHQKSVRRQGKCCLQKGHLGIQKTTNSNSSVSAAD 218
           +R R +GR H+RDR H++SV R+     ++   G++++  S+   S+ D
Sbjct: 13  SRSRSRGRGHNRDRKHRRSVDRK-----RRDTSGLERSHKSSKGGSSRD 56


>BC062602-1|AAH62602.1|  717|Homo sapiens pinin, desmosome
           associated protein protein.
          Length = 717

 Score = 30.7 bits (66), Expect = 6.4
 Identities = 16/49 (32%), Positives = 30/49 (61%)
 Frame = -3

Query: 364 NRCRRQGRVHHRDRVHQKSVRRQGKCCLQKGHLGIQKTTNSNSSVSAAD 218
           +R R +GR H+RDR H++SV R+     ++   G++++  S+   S+ D
Sbjct: 631 SRSRSRGRGHNRDRKHRRSVDRK-----RRDTSGLERSHKSSKGGSSRD 674


>AF112222-1|AAF17209.1|  717|Homo sapiens nuclear protein SDK3
           protein.
          Length = 717

 Score = 30.7 bits (66), Expect = 6.4
 Identities = 16/49 (32%), Positives = 30/49 (61%)
 Frame = -3

Query: 364 NRCRRQGRVHHRDRVHQKSVRRQGKCCLQKGHLGIQKTTNSNSSVSAAD 218
           +R R +GR H+RDR H++SV R+     ++   G++++  S+   S+ D
Sbjct: 631 SRSRSRGRGHNRDRKHRRSVDRK-----RRDTSGLERSHKSSKGGSSRD 674


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,716,888
Number of Sequences: 237096
Number of extensions: 1944831
Number of successful extensions: 4459
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4459
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9813323168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)