Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30535
         (798 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    26   0.35 
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   3.3  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   5.7  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 129 WLWPMAALNLQWDTATPLPE--VTQEASALPLSAADTELLLL 248
           W W M   NL +D  + L E  VT + +   L  AD++LL++
Sbjct: 366 WWWNMKISNLSFDKQSLLKENTVTCQEAMHMLKNADSQLLVI 407


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 387 SSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 271
           ++ +S A  AAAA   +T   +S R  ++  GN A   A
Sbjct: 125 TAASSAALAAAAAVDAATAGDKSCRYTASLAGNVAPASA 163


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 448 VHVPPPEPVEQRLPRIPAVAHPRN 519
           V++P P P   RL R P  A P N
Sbjct: 104 VYIPQPRPPHPRLRREPE-AEPGN 126



 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 448 VHVPPPEPVEQRLPRIPAVAHPRN 519
           V++P P P   RL R P  A P N
Sbjct: 130 VYIPQPRPPHPRLRREPE-AEPGN 152


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,102
Number of Sequences: 438
Number of extensions: 3693
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)