Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30534
(716 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 147 2e-36
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 147 2e-36
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.66
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 2.0
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 27 3.5
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 4.7
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 26 6.2
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 6.2
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 26 6.2
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 26 6.2
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 26 6.2
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.2
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 8.2
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 8.2
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo... 25 8.2
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 8.2
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 8.2
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 147 bits (356), Expect = 2e-36
Identities = 64/78 (82%), Positives = 71/78 (91%)
Frame = +2
Query: 20 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 199
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 200 SSEALEAGRICCNKYLVK 253
+SEALEA RIC NKYLVK
Sbjct: 61 TSEALEAARICANKYLVK 78
Score = 137 bits (332), Expect = 1e-33
Identities = 65/95 (68%), Positives = 75/95 (78%), Gaps = 1/95 (1%)
Frame = +1
Query: 259 GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRS 438
GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+
Sbjct: 81 GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRT 140
Query: 439 SDRWKAQVIEALRRAKFKFPGRQRSTYQRS-GVSQ 540
D +A IEALRR ++KFPG+QR + G SQ
Sbjct: 141 KDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQ 175
Score = 48.0 bits (109), Expect = 1e-06
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = +3
Query: 480 CQVQVPRTSKIYVSKKWGFTKYERDEFEKLREEGRLANDGLH 605
CQ + P +I VSKKWGF++Y RDE+ + R G + DG +
Sbjct: 155 CQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCY 196
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 147 bits (356), Expect = 2e-36
Identities = 64/78 (82%), Positives = 71/78 (91%)
Frame = +2
Query: 20 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 199
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 200 SSEALEAGRICCNKYLVK 253
+SEALEA RIC NKYLVK
Sbjct: 61 TSEALEAARICANKYLVK 78
Score = 137 bits (331), Expect = 2e-33
Identities = 65/95 (68%), Positives = 75/95 (78%), Gaps = 1/95 (1%)
Frame = +1
Query: 259 GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRS 438
GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+
Sbjct: 81 GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRT 140
Query: 439 SDRWKAQVIEALRRAKFKFPGRQRSTYQRS-GVSQ 540
D +A IEALRR ++KFPG+QR + G SQ
Sbjct: 141 KDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQ 175
Score = 48.0 bits (109), Expect = 1e-06
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = +3
Query: 480 CQVQVPRTSKIYVSKKWGFTKYERDEFEKLREEGRLANDGLH 605
CQ + P +I VSKKWGF++Y RDE+ + R G + DG +
Sbjct: 155 CQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCY 196
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 29.1 bits (62), Expect = 0.66
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 44 YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 220
Y+ N ++FC V + KI + +KRA +D LC+ +S + E ++ +LE+
Sbjct: 34 YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93
Query: 221 G 223
G
Sbjct: 94 G 94
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 101 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 220
DPK+R+F KRAT + C LV+ + + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 227 ICCNKYLVKTAERISSISA*DFTL 298
ICC KY V T R + I FTL
Sbjct: 9 ICCAKYFVNTKSRFNEILPPRFTL 32
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 4.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 135 RERPLTTFHCACTWCPTNMNS 197
R RP +T H +CT+C + S
Sbjct: 459 RSRPDSTSHASCTYCVARLRS 479
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 590 SEAALFTQLLKLITFILCETPLL*YV 513
S+A F ++L FI C +P+L Y+
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYL 288
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 393 STLRLAKRTTHPSLEPISSS 334
+T +LAKR T PSL P S+
Sbjct: 957 TTTKLAKRITQPSLSPARST 976
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 590 SEAALFTQLLKLITFILCETPLL*YV 513
S+A F ++L FI C +P+L Y+
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYL 288
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 590 SEAALFTQLLKLITFILCETPLL*YV 513
S+A F ++L FI C +P+L Y+
Sbjct: 235 SKARFFRRMLNAFIFIFCASPMLHYL 260
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 590 SEAALFTQLLKLITFILCETPLL*YV 513
S+A F ++L FI C +P+L Y+
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYL 288
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -2
Query: 133 LTQIEDTDLGIRYTPTEPRFRIRFIFAVPVASCWPAPH 20
L Q++++ L + T T P +R V SC+P H
Sbjct: 408 LHQLQNSILRVNSTLTSPSLDLRLELLHDVLSCFPKKH 445
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -2
Query: 220 CLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQIEDTDLG 104
CL L L + H++ ++W+ +N R LL + + + G
Sbjct: 940 CLLPLLPALLSELDHKLVSEWRRINDRGLLVEEDAEETG 978
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 8.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 262 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 366
+D H+RM ++ FH IN MLS + D + MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 8.2
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Frame = -1
Query: 236 CSRYVLPP-KP-LSSAVHIRRTPSARTVESRQRS------LSSYPNRRYGSWDQVHPDRT 81
C++ + PP KP + SA+ S T E S LS +R+ +W P
Sbjct: 494 CAKKIQPPFKPSVESAIDTSNFDSEFTSEIPMDSVVADSHLSETVQQRFANWSYQRPTTI 553
Query: 80 SISDTVYFCSTGSIL 36
SD + + GS++
Sbjct: 554 DTSDDINTIAPGSVI 568
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.4 bits (53), Expect = 8.2
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 87 VGVYLIPRSVSSIWV 131
+GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 122 DLGKKRATVDDFPLCVHLVSDEYEQL 199
++ KKRA DD + +VS EYE L
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENL 1058
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,232,640
Number of Sequences: 5004
Number of extensions: 70234
Number of successful extensions: 236
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -