Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30533
(682 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q1HR63 Cluster: 60S ribosomal protein L13a; n=2; Aedes ... 127 3e-28
UniRef50_Q9VNE9 Cluster: 60S ribosomal protein L13A; n=127; Euka... 121 1e-26
UniRef50_P93099 Cluster: 60S ribosomal protein L13a; n=4; Eukary... 111 2e-23
UniRef50_Q6RH10 Cluster: 60S ribosomal protein L13a; n=5; Magnol... 108 1e-22
UniRef50_Q75J15 Cluster: Putative ribosomal protein L13a; n=1; O... 91 2e-17
UniRef50_Q245E7 Cluster: Ribosomal protein L13 containing protei... 85 2e-15
UniRef50_A4S5V9 Cluster: Ribosomal protein L13a, component of cy... 85 2e-15
UniRef50_Q7R0D6 Cluster: GLP_608_8346_8939; n=1; Giardia lamblia... 85 2e-15
UniRef50_Q98RZ9 Cluster: 60s ribosomal protein L13A; n=1; Guilla... 79 1e-13
UniRef50_Q4Q3B9 Cluster: 60S ribosomal protein L13a, putative; n... 71 3e-11
UniRef50_Q8SS16 Cluster: 60S RIBOSOMAL PROTEIN L13A; n=1; Enceph... 70 5e-11
UniRef50_A2DZ26 Cluster: Ribosomal protein L13, putative; n=7; T... 66 1e-09
UniRef50_UPI0000EB39CE Cluster: UPI0000EB39CE related cluster; n... 64 3e-09
UniRef50_O59300 Cluster: 50S ribosomal protein L13P; n=45; root|... 59 9e-08
UniRef50_A1RWV8 Cluster: Ribosomal protein L13; n=1; Thermofilum... 56 8e-07
UniRef50_O18718 Cluster: Ribosomal protein L13A; n=4; Entamoeba|... 56 1e-06
UniRef50_Q8TVB6 Cluster: 50S ribosomal protein L13P; n=1; Methan... 55 1e-06
UniRef50_Q4GXI8 Cluster: Ribomsomal protein L13Ae; n=2; Neoptera... 53 7e-06
UniRef50_A0RXP5 Cluster: Ribosomal protein L13; n=1; Cenarchaeum... 52 2e-05
UniRef50_A7DRR6 Cluster: Ribosomal protein L13; n=1; Candidatus ... 50 4e-05
UniRef50_O29137 Cluster: 50S ribosomal protein L13P; n=1; Archae... 50 5e-05
UniRef50_Q8PW45 Cluster: 50S ribosomal protein L13P; n=11; Eurya... 49 9e-05
UniRef50_Q9YB50 Cluster: 50S ribosomal protein L13P; n=1; Aeropy... 49 1e-04
UniRef50_A7D2Q7 Cluster: Ribosomal protein L13; n=1; Halorubrum ... 48 3e-04
UniRef50_Q74ND7 Cluster: 50S ribosomal protein L13P; n=1; Nanoar... 48 3e-04
UniRef50_P29198 Cluster: 50S ribosomal protein L13P; n=4; Haloba... 47 4e-04
UniRef50_Q8ZYQ1 Cluster: 50S ribosomal protein L13P; n=5; Thermo... 46 6e-04
UniRef50_Q2Q0G5 Cluster: Ribosomal protein L13P; n=1; uncultured... 44 0.003
UniRef50_Q3LWM1 Cluster: Ribosomal protein L13A; n=1; Bigelowiel... 44 0.005
UniRef50_Q9AVH9 Cluster: Putative senescence-associated protein;... 43 0.008
UniRef50_Q53K43 Cluster: Retrotransposon protein, putative, uncl... 42 0.018
UniRef50_P95991 Cluster: 50S ribosomal protein L13P; n=3; Sulfol... 41 0.024
UniRef50_UPI0000EBD60B Cluster: PREDICTED: similar to ribosomal ... 40 0.042
UniRef50_Q9M3S6 Cluster: 60S L13 ribosomal protein; n=1; Arabido... 40 0.074
UniRef50_Q6LXM6 Cluster: 50S ribosomal protein L13P; n=6; Methan... 40 0.074
UniRef50_P39473 Cluster: 50S ribosomal protein L13P; n=4; Thermo... 38 0.17
UniRef50_Q6L294 Cluster: 50S ribosomal protein L13P; n=4; Thermo... 38 0.30
UniRef50_Q85FU2 Cluster: 50S ribosomal protein L13; n=1; Cyanidi... 37 0.52
UniRef50_Q4QG46 Cluster: Putative uncharacterized protein; n=2; ... 35 1.6
UniRef50_Q3AW67 Cluster: 50S ribosomal protein L13; n=12; Bacter... 34 3.7
UniRef50_Q2QM14 Cluster: Retrotransposon protein, putative, Ty3-... 33 4.9
UniRef50_Q7V521 Cluster: 50S ribosomal protein L13; n=32; Bacter... 33 6.4
UniRef50_A1TJ69 Cluster: Ymc-like protein; n=1; Acidovorax avena... 33 8.5
UniRef50_Q855Z2 Cluster: Gp80; n=1; Mycobacterium phage Barnyard... 33 8.5
>UniRef50_Q1HR63 Cluster: 60S ribosomal protein L13a; n=2; Aedes
aegypti|Rep: 60S ribosomal protein L13a - Aedes aegypti
(Yellowfever mosquito)
Length = 236
Score = 127 bits (306), Expect = 3e-28
Identities = 53/102 (51%), Positives = 71/102 (69%)
Frame = -1
Query: 559 CGSLRTNQHLWQLL*EQLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTER 380
C L+ + H ++ ++K +++LRKRCNVNPARGPFHFRAPS++LWK VRGM+PHKT+R
Sbjct: 40 CEDLQLSGHFFR---NKIKFLAYLRKRCNVNPARGPFHFRAPSRMLWKAVRGMVPHKTKR 96
Query: 379 GKNALRRLRTYDGCPPPFDNXXXXXXXXXXXVFCLKPGRNYC 254
G NAL+RL+ Y+G P PFD CL+P R +C
Sbjct: 97 GHNALKRLKVYEGIPSPFDRQKRLCVPTAMRQLCLRPDRKFC 138
Score = 81.0 bits (191), Expect = 2e-14
Identities = 37/52 (71%), Positives = 43/52 (82%)
Frame = -2
Query: 666 MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRN 511
M G S K I+IDGRGHLLGRLA+VIAK +L G KVVVVRCE + +SG+FFRN
Sbjct: 1 MPGLSEKPILIDGRGHLLGRLASVIAKQILNGRKVVVVRCEDLQLSGHFFRN 52
Score = 53.2 bits (122), Expect = 6e-06
Identities = 23/40 (57%), Positives = 30/40 (75%)
Frame = -3
Query: 251 VGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRI 132
VGR++HE+GWKYRDVV LE KRK K+ + KKLK++
Sbjct: 140 VGRVAHEVGWKYRDVVNNLEAKRKIKSRLSYLHSKKLKKL 179
>UniRef50_Q9VNE9 Cluster: 60S ribosomal protein L13A; n=127;
Eukaryota|Rep: 60S ribosomal protein L13A - Drosophila
melanogaster (Fruit fly)
Length = 205
Score = 121 bits (292), Expect = 1e-26
Identities = 62/151 (41%), Positives = 87/151 (57%)
Frame = -1
Query: 559 CGSLRTNQHLWQLL*EQLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTER 380
C L + H ++ ++K +++LRKRCNVNPARGPFHFRAPS+I +K VRGMIPHKT+R
Sbjct: 40 CEELNLSGHFYR---NKIKFLAYLRKRCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKR 96
Query: 379 GKNALRRLRTYDGCPPPFDNXXXXXXXXXXXVFCLKPGRNYCM*ADCPMKLDGNTVMLFV 200
G+ AL RLR +DG P P+D V L+ R YC ++ + +
Sbjct: 97 GQAALARLRVFDGIPSPYDKRRRVVVPIAMRVLTLRSDRKYCQVGRLSHEVGWHYQDVIK 156
Query: 199 SLKTRGRARLLRELPMKRNLRGFTKDAGEKV 107
SL+ + +A+L L R L+ T A E +
Sbjct: 157 SLERKRKAKLRVTLKHNRELKKLTVKARENI 187
Score = 86.6 bits (205), Expect = 5e-16
Identities = 36/52 (69%), Positives = 47/52 (90%)
Frame = -2
Query: 666 MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRN 511
MTG +N+ +VIDGRGHLLGRLA+V+AK LL+G KV VVRCE++N+SG+F+RN
Sbjct: 1 MTGLTNRTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRN 52
>UniRef50_P93099 Cluster: 60S ribosomal protein L13a; n=4;
Eukaryota|Rep: 60S ribosomal protein L13a - Cyanophora
paradoxa
Length = 200
Score = 111 bits (267), Expect = 2e-23
Identities = 47/87 (54%), Positives = 61/87 (70%)
Frame = -1
Query: 511 QLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPP 332
+LK +FL+KR N NP RGPFHFR+P++ILW+T+RGMIPHKT RG AL RL+ ++G PP
Sbjct: 50 KLKFHAFLKKRMNTNPRRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPP 109
Query: 331 PFDNXXXXXXXXXXXVFCLKPGRNYCM 251
P+D V LKPGR +C+
Sbjct: 110 PYDKMKRMVIPQALRVLRLKPGRKFCV 136
Score = 67.7 bits (158), Expect = 2e-10
Identities = 31/46 (67%), Positives = 37/46 (80%)
Frame = -2
Query: 648 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRN 511
K +V+D RGHLLGRLAA +AK LL G +VV VR E+INISG+ FRN
Sbjct: 4 KVVVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRN 49
Score = 40.7 bits (91), Expect = 0.032
Identities = 17/37 (45%), Positives = 27/37 (72%)
Frame = -3
Query: 251 VGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKL 141
+GRL+ E+GW++ D+V +LE+KRK K+ A +K L
Sbjct: 137 LGRLATEVGWRHSDLVTRLEEKRKTKSAAFYARKKTL 173
>UniRef50_Q6RH10 Cluster: 60S ribosomal protein L13a; n=5;
Magnoliophyta|Rep: 60S ribosomal protein L13a - Capsicum
annuum (Bell pepper)
Length = 220
Score = 108 bits (259), Expect = 1e-22
Identities = 47/91 (51%), Positives = 61/91 (67%)
Frame = -1
Query: 523 LL*EQLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYD 344
L+ +++K + FLRKR N P+ GP HFRAPSKILW+T+RGMIPHKT+RG AL RL+ Y+
Sbjct: 52 LVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSKILWRTIRGMIPHKTKRGAAALARLKVYE 111
Query: 343 GCPPPFDNXXXXXXXXXXXVFCLKPGRNYCM 251
G PPP+D V L+ G YC+
Sbjct: 112 GVPPPYDKIKRMVIPDALKVLRLQAGHKYCL 142
Score = 62.5 bits (145), Expect = 9e-09
Identities = 28/54 (51%), Positives = 40/54 (74%)
Frame = -2
Query: 675 VVKMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFR 514
+V +G S + IV+D R H+LGRL++++AK LL G +VVVVRCE+I +SG R
Sbjct: 1 MVSGSGISARRIVVDARHHMLGRLSSILAKELLNGQRVVVVRCEEICLSGGLVR 54
Score = 42.3 bits (95), Expect = 0.011
Identities = 17/36 (47%), Positives = 28/36 (77%)
Frame = -3
Query: 251 VGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKK 144
+G+LS E+GW + D +++LEDKRK +A +V YE++
Sbjct: 143 LGKLSSEVGWNHYDTIKELEDKRKERA--QVTYERR 176
>UniRef50_Q75J15 Cluster: Putative ribosomal protein L13a; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
ribosomal protein L13a - Oryza sativa subsp. japonica
(Rice)
Length = 172
Score = 91.1 bits (216), Expect = 2e-17
Identities = 39/77 (50%), Positives = 50/77 (64%)
Frame = -1
Query: 481 RCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 302
R N P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL+ Y+ PP+D
Sbjct: 40 RMNTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVI 99
Query: 301 XXXXXVFCLKPGRNYCM 251
V L+PG YC+
Sbjct: 100 PDALKVLRLQPGHKYCL 116
Score = 40.3 bits (90), Expect = 0.042
Identities = 23/66 (34%), Positives = 37/66 (56%)
Frame = -2
Query: 675 VVKMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNNSSLC 496
+V +G +V+D R H+L RLA++IAK LL G +VV + + + FR+ + +
Sbjct: 1 MVSGSGVCAPRVVVDARHHMLSRLASIIAKELLNGKRVVRMNTKPSH-GPIHFRSPAKIL 59
Query: 495 HSCVRG 478
VRG
Sbjct: 60 WRTVRG 65
>UniRef50_Q245E7 Cluster: Ribosomal protein L13 containing protein;
n=16; Alveolata|Rep: Ribosomal protein L13 containing
protein - Tetrahymena thermophila SB210
Length = 270
Score = 85.0 bits (201), Expect = 2e-15
Identities = 44/113 (38%), Positives = 58/113 (51%)
Frame = -1
Query: 511 QLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPP 332
++K FL K N NP RG HFRAPS+I W+ VRGM+PHKT +G AL RL+ ++G P
Sbjct: 122 RVKFSEFLNKWMNHNPRRGVQHFRAPSRIFWRAVRGMLPHKTPKGAAALERLKIFEGIPT 181
Query: 331 PFDNXXXXXXXXXXXVFCLKPGRNYCM*ADCPMKLDGNTVMLFVSLKTRGRAR 173
P+D V L+ R C D + L L+ + RAR
Sbjct: 182 PYDRVKKQVVVDALKVQRLRNSRPVCKLGDLSASVGWGKQTLIEKLEEKRRAR 234
Score = 66.9 bits (156), Expect = 4e-10
Identities = 30/47 (63%), Positives = 38/47 (80%)
Frame = -2
Query: 651 NKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRN 511
+K +VID +GHLLGRLA+ +AK LL G ++VVVR E INISG+ FRN
Sbjct: 75 DKLVVIDAKGHLLGRLASYVAKELLSGQRIVVVRTEAINISGSLFRN 121
Score = 33.5 bits (73), Expect = 4.9
Identities = 14/39 (35%), Positives = 27/39 (69%)
Frame = -3
Query: 251 VGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKR 135
+G LS +GW + ++ KLE+KR+ +A + ++KK+K+
Sbjct: 209 LGDLSASVGWGKQTLIEKLEEKRRARA--KTYHDKKVKQ 245
>UniRef50_A4S5V9 Cluster: Ribosomal protein L13a, component of
cytosolic 80S ribosome and 60S large subunit; n=2;
Ostreococcus|Rep: Ribosomal protein L13a, component of
cytosolic 80S ribosome and 60S large subunit -
Ostreococcus lucimarinus CCE9901
Length = 199
Score = 84.6 bits (200), Expect = 2e-15
Identities = 35/84 (41%), Positives = 48/84 (57%)
Frame = -1
Query: 493 FLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXX 314
+ KR N NP +GP+H+ +PS++ WKTVRGM+PHKT RG A R + Y+G P P+D
Sbjct: 55 YKNKRMNTNPKKGPYHYTSPSRLFWKTVRGMLPHKTVRGAAAFERFKAYEGIPAPYDKVK 114
Query: 313 XXXXXXXXXVFCLKPGRNYCM*AD 242
V L G +C+ D
Sbjct: 115 RAVVPEALKVLRLGEGHRFCVLGD 138
Score = 55.6 bits (128), Expect = 1e-06
Identities = 26/46 (56%), Positives = 34/46 (73%)
Frame = -2
Query: 651 NKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFR 514
+K IVID +GHL GRLA++++K LL+G VVVVR E I +SG R
Sbjct: 2 DKVIVIDAKGHLFGRLASIVSKQLLQGQHVVVVRTEGICMSGGMVR 47
>UniRef50_Q7R0D6 Cluster: GLP_608_8346_8939; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_608_8346_8939 - Giardia lamblia ATCC
50803
Length = 197
Score = 84.6 bits (200), Expect = 2e-15
Identities = 38/79 (48%), Positives = 48/79 (60%)
Frame = -1
Query: 490 LRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXX 311
+ KR N N RGPFHFRAP++I+ +T+RGMIP+KT RG +A+ RLR YDG PP
Sbjct: 55 MHKRTNFNHLRGPFHFRAPAEIVRRTIRGMIPYKTVRGSDAMSRLRVYDGIPPCCARYKR 114
Query: 310 XXXXXXXXVFCLKPGRNYC 254
CL+P R C
Sbjct: 115 VVCPSAMAYLCLRPERRRC 133
Score = 56.0 bits (129), Expect = 8e-07
Identities = 25/41 (60%), Positives = 34/41 (82%)
Frame = -2
Query: 642 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNF 520
IVID +GH+LGRL+A++AK LL G++V +VRCE+ ISG F
Sbjct: 4 IVIDCKGHILGRLSAIVAKELLHGHEVALVRCEKAIISGAF 44
>UniRef50_Q98RZ9 Cluster: 60s ribosomal protein L13A; n=1;
Guillardia theta|Rep: 60s ribosomal protein L13A -
Guillardia theta (Cryptomonas phi)
Length = 194
Score = 78.6 bits (185), Expect = 1e-13
Identities = 32/60 (53%), Positives = 44/60 (73%)
Frame = -1
Query: 505 KLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPF 326
K S +K+ N NP RGPFHF++PSKIL++T++ MIPHKT RG AL+ L+ ++G P F
Sbjct: 50 KYKSIFKKKTNTNPRRGPFHFKSPSKILYQTIKRMIPHKTMRGSKALKNLKIFEGLPRIF 109
Score = 50.8 bits (116), Expect = 3e-05
Identities = 20/46 (43%), Positives = 34/46 (73%)
Frame = -2
Query: 648 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRN 511
K V+D + HLLGR+A++ AK +L+G+K++++R E +I+G RN
Sbjct: 2 KIHVLDAKNHLLGRMASICAKKILQGDKIIIIRSELTSITGKLGRN 47
>UniRef50_Q4Q3B9 Cluster: 60S ribosomal protein L13a, putative;
n=10; Trypanosomatidae|Rep: 60S ribosomal protein L13a,
putative - Leishmania major
Length = 222
Score = 70.5 bits (165), Expect = 3e-11
Identities = 30/60 (50%), Positives = 40/60 (66%)
Frame = -1
Query: 511 QLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPP 332
++K + +LRKR NP +GPFH RAPS + +TVR M+P T+RG AL L Y+G PP
Sbjct: 69 KIKYLQYLRKRKLTNPTKGPFHHRAPSDVFVRTVRSMLPRYTKRGMKALNSLVAYEGIPP 128
Score = 59.7 bits (138), Expect = 6e-08
Identities = 28/44 (63%), Positives = 34/44 (77%)
Frame = -2
Query: 642 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRN 511
IVID + H+LGR AAV+AK LL G K+ VVRCEQ+NI+G RN
Sbjct: 25 IVIDLKDHVLGRAAAVVAKQLLLGKKITVVRCEQLNIAGTEIRN 68
Score = 33.9 bits (74), Expect = 3.7
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -3
Query: 251 VGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLK 138
+G + +GWKY DVV LE R KA + + KL+
Sbjct: 157 LGNMCKHVGWKYSDVVANLEKARVEKASRHHEKQAKLR 194
>UniRef50_Q8SS16 Cluster: 60S RIBOSOMAL PROTEIN L13A; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L13A
- Encephalitozoon cuniculi
Length = 198
Score = 70.1 bits (164), Expect = 5e-11
Identities = 32/57 (56%), Positives = 37/57 (64%)
Frame = -1
Query: 505 KLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 335
K +L KRC VNP RGPFHFR P L K +R MI +K RGK A+ RL TY+G P
Sbjct: 53 KFKQYLNKRCLVNPRRGPFHFREPRMHLAKIIRRMISYKKPRGKAAMSRLATYEGIP 109
Score = 39.9 bits (89), Expect = 0.056
Identities = 19/43 (44%), Positives = 28/43 (65%)
Frame = -2
Query: 642 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFR 514
++ID G + G+LAA +AK+LLEG +V VV E+ G+ R
Sbjct: 7 VIIDATGQVAGKLAAKVAKLLLEGVRVTVVCAEEAVFVGSLER 49
>UniRef50_A2DZ26 Cluster: Ribosomal protein L13, putative; n=7;
Trichomonas vaginalis G3|Rep: Ribosomal protein L13,
putative - Trichomonas vaginalis G3
Length = 200
Score = 65.7 bits (153), Expect = 1e-09
Identities = 29/56 (51%), Positives = 36/56 (64%)
Frame = -1
Query: 493 FLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPF 326
FL K N NP GPFH RAP +I + VRGMIP+KT RG +A L+ Y+G P +
Sbjct: 55 FLNKTTNSNPRDGPFHQRAPHEIFARAVRGMIPYKTHRGADAFANLQCYEGIPAKY 110
Score = 59.3 bits (137), Expect = 9e-08
Identities = 26/39 (66%), Positives = 33/39 (84%)
Frame = -2
Query: 642 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISG 526
IVID +GH+ GRLAA +AK LL+G KVVVVRCE+I ++G
Sbjct: 5 IVIDAKGHIQGRLAAAVAKQLLKGRKVVVVRCEEIELNG 43
Score = 37.5 bits (83), Expect = 0.30
Identities = 15/29 (51%), Positives = 23/29 (79%)
Frame = -3
Query: 251 VGRLSHEIGWKYRDVVRKLEDKRKGKAVK 165
+GRLS +GWKY +VV +LE++RK ++ K
Sbjct: 136 LGRLSTTMGWKYGNVVAQLEEQRKAESAK 164
>UniRef50_UPI0000EB39CE Cluster: UPI0000EB39CE related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB39CE UniRef100
entry - Canis familiaris
Length = 172
Score = 64.1 bits (149), Expect = 3e-09
Identities = 25/42 (59%), Positives = 34/42 (80%)
Frame = -1
Query: 511 QLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKT 386
+LK ++FL K+ N NP+RGP+ F+APS+I W T RGM+PHKT
Sbjct: 50 KLKYLAFLCKQMNTNPSRGPYRFQAPSRIFWWTARGMLPHKT 91
Score = 58.8 bits (136), Expect = 1e-07
Identities = 30/46 (65%), Positives = 36/46 (78%)
Frame = -2
Query: 648 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRN 511
+ +V+ GRGHLLG LAA +AK +L G KVVVV E INISGNF+RN
Sbjct: 5 QVLVLSGRGHLLGCLAATVAKQVL-GCKVVVVHYEGINISGNFYRN 49
Score = 42.3 bits (95), Expect = 0.011
Identities = 18/41 (43%), Positives = 28/41 (68%)
Frame = -3
Query: 254 HVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRI 132
++GRL+H++GWKY+ V LE+ RK KA +K+L R+
Sbjct: 106 YLGRLAHKVGWKYQAVTATLEENRKEKAKIHYWKKKQLMRL 146
>UniRef50_O59300 Cluster: 50S ribosomal protein L13P; n=45;
root|Rep: 50S ribosomal protein L13P - Pyrococcus
horikoshii
Length = 142
Score = 59.3 bits (137), Expect = 9e-08
Identities = 25/54 (46%), Positives = 36/54 (66%)
Frame = -1
Query: 481 RCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDN 320
R NP RGPF+ + +I+ +T+RGM+P KT+RG+ A RRL+ Y G P F +
Sbjct: 56 RTLTNPRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQD 109
Score = 44.0 bits (99), Expect = 0.003
Identities = 20/39 (51%), Positives = 30/39 (76%)
Frame = -2
Query: 639 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGN 523
+I+ G +LGRLA+ +AK+LLEG +VV+V E+ I+GN
Sbjct: 3 IINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGN 41
>UniRef50_A1RWV8 Cluster: Ribosomal protein L13; n=1; Thermofilum
pendens Hrk 5|Rep: Ribosomal protein L13 - Thermofilum
pendens (strain Hrk 5)
Length = 154
Score = 56.0 bits (129), Expect = 8e-07
Identities = 28/47 (59%), Positives = 38/47 (80%)
Frame = -2
Query: 666 MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISG 526
M+G +AIVIDG GH+ GRLA+V+AK LL+G++VVVV E+I I+G
Sbjct: 1 MSG-KEEAIVIDGTGHIAGRLASVVAKRLLKGDRVVVVNAEKIVITG 46
Score = 41.5 bits (93), Expect = 0.018
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = -1
Query: 469 NPA-RGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDN 320
NP RGP + + P ++ + VRGM+P + G+++L+RL Y G P + N
Sbjct: 67 NPELRGPKYPKTPDRLFKRMVRGMLPMEKTIGRDSLKRLTVYVGLPDEYRN 117
>UniRef50_O18718 Cluster: Ribosomal protein L13A; n=4;
Entamoeba|Rep: Ribosomal protein L13A - Entamoeba dispar
Length = 87
Score = 55.6 bits (128), Expect = 1e-06
Identities = 24/43 (55%), Positives = 33/43 (76%)
Frame = -2
Query: 654 SNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISG 526
+NK VID GH+LGR+A+V+AK LL G K+V+VRCE + + G
Sbjct: 8 NNKVTVIDCHGHVLGRVASVVAKHLLLGQKIVLVRCEDLQVCG 50
Score = 36.3 bits (80), Expect = 0.69
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = -1
Query: 559 CGSLRTNQHLWQLL*EQLKLMSFLRKRCNVNPARGPFHFRAPSKILWK 416
CG+L+ W+L + RKR N NP RG FH R+P++++ K
Sbjct: 49 CGTLKMRLVQWEL---------YQRKRVNTNPTRGAFHHRSPAEMVRK 87
>UniRef50_Q8TVB6 Cluster: 50S ribosomal protein L13P; n=1;
Methanopyrus kandleri|Rep: 50S ribosomal protein L13P -
Methanopyrus kandleri
Length = 159
Score = 55.2 bits (127), Expect = 1e-06
Identities = 25/53 (47%), Positives = 35/53 (66%)
Frame = -1
Query: 493 FLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 335
+L+K +P +GPF+ R P I + VRGM+P KT+RG+ A +RLR Y G P
Sbjct: 63 WLQKIQRGDPKKGPFYPRRPDLIFRRVVRGMLPWKTKRGREAFKRLRAYIGTP 115
Score = 39.1 bits (87), Expect = 0.098
Identities = 17/38 (44%), Positives = 27/38 (71%)
Frame = -2
Query: 639 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISG 526
VID +LGRLA+V+AK +L+G ++ V+ E+ I+G
Sbjct: 17 VIDAENAVLGRLASVVAKRILKGERIAVINTEKAIITG 54
>UniRef50_Q4GXI8 Cluster: Ribomsomal protein L13Ae; n=2;
Neoptera|Rep: Ribomsomal protein L13Ae - Cicindela
campestris (Green tiger beetle)
Length = 78
Score = 52.8 bits (121), Expect = 7e-06
Identities = 21/41 (51%), Positives = 29/41 (70%)
Frame = -3
Query: 254 HVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRI 132
HVGRLSHE+GWKY+ V+ LE KR+ K + +K+KR+
Sbjct: 13 HVGRLSHEVGWKYQKVIESLEHKRQVKVAIKARKHRKMKRL 53
>UniRef50_A0RXP5 Cluster: Ribosomal protein L13; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein L13 - Cenarchaeum
symbiosum
Length = 139
Score = 51.6 bits (118), Expect = 2e-05
Identities = 23/53 (43%), Positives = 31/53 (58%)
Frame = -1
Query: 493 FLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 335
FL+ ++P GP+H R P I+ + +RGM+P K GK A RLR Y G P
Sbjct: 50 FLKIASIIHPEHGPYHPRRPDTIMTRMIRGMLPRKKPSGKAAHSRLRAYIGSP 102
Score = 49.2 bits (112), Expect = 9e-05
Identities = 19/38 (50%), Positives = 30/38 (78%)
Frame = -2
Query: 639 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISG 526
++D H+ GRLA+ +AK+LLEGN+V ++ CE++ ISG
Sbjct: 1 MVDATDHIAGRLASNVAKMLLEGNRVSIINCEKVMISG 38
>UniRef50_A7DRR6 Cluster: Ribosomal protein L13; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L13
- Candidatus Nitrosopumilus maritimus SCM1
Length = 154
Score = 50.4 bits (115), Expect = 4e-05
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = -1
Query: 493 FLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPH-KTERGKNALRRLRTYDGCP 335
FL +NP GP H+R P I+ K +R M+P+ + GK +++RLR Y G P
Sbjct: 64 FLEINSIINPKHGPVHYRRPDTIITKMIRQMLPYDRKPSGKESIKRLRAYIGSP 117
Score = 45.6 bits (103), Expect = 0.001
Identities = 18/43 (41%), Positives = 32/43 (74%)
Frame = -2
Query: 654 SNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISG 526
+++ IV+D H+ GRL++ +AK+L +G++V +V CE+I SG
Sbjct: 10 TDRPIVVDATNHIAGRLSSNVAKLLKQGHRVSIVNCEKIMYSG 52
>UniRef50_O29137 Cluster: 50S ribosomal protein L13P; n=1;
Archaeoglobus fulgidus|Rep: 50S ribosomal protein L13P -
Archaeoglobus fulgidus
Length = 156
Score = 50.0 bits (114), Expect = 5e-05
Identities = 21/42 (50%), Positives = 30/42 (71%)
Frame = -1
Query: 460 RGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 335
+GP+ R P +I +TVRGM+P K+ RG++A RRLR + G P
Sbjct: 75 KGPYFPRHPERIFKRTVRGMLPWKSSRGRDAYRRLRVFMGVP 116
Score = 45.6 bits (103), Expect = 0.001
Identities = 21/39 (53%), Positives = 29/39 (74%)
Frame = -2
Query: 639 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGN 523
VID GH+LGRL++ IAK LL G ++VVV E+ I+G+
Sbjct: 18 VIDASGHILGRLSSKIAKRLLNGERIVVVNAEKAVITGD 56
>UniRef50_Q8PW45 Cluster: 50S ribosomal protein L13P; n=11;
Euryarchaeota|Rep: 50S ribosomal protein L13P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 140
Score = 49.2 bits (112), Expect = 9e-05
Identities = 19/41 (46%), Positives = 30/41 (73%)
Frame = -1
Query: 457 GPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 335
GP+ + P +IL +T+RGM+P+K RG++A+ RL+ Y G P
Sbjct: 62 GPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVP 102
Score = 39.9 bits (89), Expect = 0.056
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = -2
Query: 639 VIDGRGHLLGRLAAVIAKVLLEGN-KVVVVRCEQINISGNFFRNNSSLCHSCVRGAT 472
VID +G +LGRLA+ +AK LL G+ KV ++ E+ ISG+ + RGAT
Sbjct: 3 VIDAKGLILGRLASSVAKQLLSGDEKVYIINAEKAIISGSRAATLREYRETRDRGAT 59
>UniRef50_Q9YB50 Cluster: 50S ribosomal protein L13P; n=1; Aeropyrum
pernix|Rep: 50S ribosomal protein L13P - Aeropyrum
pernix
Length = 155
Score = 48.8 bits (111), Expect = 1e-04
Identities = 23/48 (47%), Positives = 35/48 (72%)
Frame = -2
Query: 666 MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGN 523
+ G + IV+DG G ++GRLA+V+AK+LL G +V VV E+I +SG+
Sbjct: 3 LAGGEAREIVVDGSGMIMGRLASVVAKLLLAGWRVNVVNAEKIVLSGD 50
Score = 39.5 bits (88), Expect = 0.074
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = -1
Query: 442 RAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 335
R P ++ VRGM+P RG+ AL RLR Y G P
Sbjct: 79 RTPQRLFKHAVRGMLPKNKARGRRALARLRVYVGVP 114
>UniRef50_A7D2Q7 Cluster: Ribosomal protein L13; n=1; Halorubrum
lacusprofundi ATCC 49239|Rep: Ribosomal protein L13 -
Halorubrum lacusprofundi ATCC 49239
Length = 149
Score = 47.6 bits (108), Expect = 3e-04
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = -1
Query: 499 MSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 335
M R + GP++ + P +I + +RGM+P+KTE G+ AL +R Y G P
Sbjct: 54 METYHTRAELGSDSGPYYPKRPDRIFKRAIRGMLPYKTEDGREALSNVRVYVGNP 108
Score = 37.5 bits (83), Expect = 0.30
Identities = 16/40 (40%), Positives = 28/40 (70%)
Frame = -2
Query: 642 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGN 523
+V+D R +LGR+++ +A+ +L+G V VV E+ I+GN
Sbjct: 10 VVVDARDCILGRVSSKVAQRVLDGETVAVVNAERAVITGN 49
>UniRef50_Q74ND7 Cluster: 50S ribosomal protein L13P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L13P -
Nanoarchaeum equitans
Length = 162
Score = 47.6 bits (108), Expect = 3e-04
Identities = 18/42 (42%), Positives = 28/42 (66%)
Frame = -1
Query: 460 RGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 335
+GPF+ + P IL + +RGM+P KT RG+ L+ ++ Y G P
Sbjct: 65 KGPFYPKRPDNILKRVIRGMLPRKTARGRELLKNVKVYIGVP 106
>UniRef50_P29198 Cluster: 50S ribosomal protein L13P; n=4;
Halobacteriaceae|Rep: 50S ribosomal protein L13P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 145
Score = 47.2 bits (107), Expect = 4e-04
Identities = 20/50 (40%), Positives = 30/50 (60%)
Frame = -1
Query: 484 KRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 335
KR ++ G F+ + P I +T+RGM+PHK +RG+ A +R Y G P
Sbjct: 59 KRVDIGNDNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNP 108
Score = 34.7 bits (76), Expect = 2.1
Identities = 14/39 (35%), Positives = 26/39 (66%)
Frame = -2
Query: 642 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISG 526
+++D R ++GR+A+ +A+ L+G V VV E+ I+G
Sbjct: 10 VIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITG 48
>UniRef50_Q8ZYQ1 Cluster: 50S ribosomal protein L13P; n=5;
Thermoproteaceae|Rep: 50S ribosomal protein L13P -
Pyrobaculum aerophilum
Length = 187
Score = 46.4 bits (105), Expect = 6e-04
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = -1
Query: 481 RCNVNPAR-GPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 335
R + NP + GP R P ++ + VRGM+P K+E G++AL+RLR Y P
Sbjct: 76 RTHYNPEKAGPKVPRRPDRVFKRIVRGMLPKKSETGRSALKRLRVYMSIP 125
Score = 40.7 bits (91), Expect = 0.032
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Frame = -2
Query: 642 IVIDGRGHLLGRLAAVIAKVLLE--GNKVVVVRCEQINISGN 523
+++D GH+ GRLA IAK LLE ++VVV E++ I+G+
Sbjct: 19 VIVDAEGHVAGRLATYIAKALLERPNLRIVVVNAEKLVITGD 60
>UniRef50_Q2Q0G5 Cluster: Ribosomal protein L13P; n=1; uncultured
organism HF70_19B12|Rep: Ribosomal protein L13P -
uncultured organism HF70_19B12
Length = 161
Score = 44.0 bits (99), Expect = 0.003
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = -1
Query: 502 LMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPH-KTERGKNALRRLRTYDGCP 335
L + RK +P +GPF R P IL +TVRGM+P+ K G+ A++ LR G P
Sbjct: 57 LADYDRKYKLNHPRKGPFFPRMPDMILKRTVRGMLPYQKKSSGRQAVKDLRVMIGTP 113
>UniRef50_Q3LWM1 Cluster: Ribosomal protein L13A; n=1; Bigelowiella
natans|Rep: Ribosomal protein L13A - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 181
Score = 43.6 bits (98), Expect = 0.005
Identities = 20/43 (46%), Positives = 29/43 (67%)
Frame = -2
Query: 648 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNF 520
K IVIDGR L+GRLA+ I +L +G + V+RC+ + SG +
Sbjct: 3 KTIVIDGRNQLIGRLASNIVILLKKGYTLKVIRCKDLVFSGRY 45
>UniRef50_Q9AVH9 Cluster: Putative senescence-associated protein;
n=1; Pisum sativum|Rep: Putative senescence-associated
protein - Pisum sativum (Garden pea)
Length = 255
Score = 42.7 bits (96), Expect = 0.008
Identities = 32/91 (35%), Positives = 43/91 (47%)
Frame = -2
Query: 618 LLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNNSSLCHSCVRGAT*ILLVDLSILE 439
+LGRLA+++AK L + +VRCE+I ISG R R
Sbjct: 1 MLGRLASIVAKELSMVRRSFLVRCEEICISGGLGRQKMKYMRFLRRRMNTKPSHGPITFV 60
Query: 438 LHLRFYGRL*EV*SHTKQSVARMLLGGYVHM 346
LH R +G L HT+ SVAR+ L G +M
Sbjct: 61 LHPRSFGALFVEWFHTRPSVARLHLLGCKYM 91
>UniRef50_Q53K43 Cluster: Retrotransposon protein, putative,
unclassified; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Retrotransposon protein, putative,
unclassified - Oryza sativa subsp. japonica (Rice)
Length = 512
Score = 41.5 bits (93), Expect = 0.018
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = -1
Query: 382 RGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXVFCLKPGRNYCM 251
RG+ AL RL+ Y+G PPP+D V L+PG YC+
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCL 52
>UniRef50_P95991 Cluster: 50S ribosomal protein L13P; n=3;
Sulfolobaceae|Rep: 50S ribosomal protein L13P -
Sulfolobus solfataricus
Length = 149
Score = 41.1 bits (92), Expect = 0.024
Identities = 17/46 (36%), Positives = 30/46 (65%)
Frame = -2
Query: 663 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISG 526
T + ++I+ G +LGR+A+ + ++L EG KV++V E+ ISG
Sbjct: 3 TQVQEQVVIINAEGQILGRMASNVVRLLKEGKKVIIVNGEKAVISG 48
Score = 37.5 bits (83), Expect = 0.30
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = -1
Query: 469 NPAR-GPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFD 323
NP R G R+P I+ +T+RGM+P K+ +G+ L+ ++ Y G P F+
Sbjct: 68 NPYRNGIRRPRSPINIVKRTIRGMLP-KSSKGRRMLKNVKIYVGVPKEFE 116
>UniRef50_UPI0000EBD60B Cluster: PREDICTED: similar to ribosomal
protein L13a; n=2; Bos taurus|Rep: PREDICTED: similar to
ribosomal protein L13a - Bos taurus
Length = 112
Score = 40.3 bits (90), Expect = 0.042
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = -1
Query: 499 MSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYD 344
+ + + NP+ GPF F P I TV+ ++P+K + + L L+ +D
Sbjct: 6 LDLFHRPLDTNPSNGPFQFWVPKHIFRHTVQDLLPYKIKHDQETLEHLKVFD 57
>UniRef50_Q9M3S6 Cluster: 60S L13 ribosomal protein; n=1;
Arabidopsis thaliana|Rep: 60S L13 ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 61
Score = 39.5 bits (88), Expect = 0.074
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 239 SHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLK 138
+HE+GW+Y+ +V KLE+KRK VK AY K K
Sbjct: 1 AHEVGWQYQGIVEKLEEKRK---VKGTAYYTKKK 31
>UniRef50_Q6LXM6 Cluster: 50S ribosomal protein L13P; n=6;
Methanococcales|Rep: 50S ribosomal protein L13P -
Methanococcus maripaludis
Length = 137
Score = 39.5 bits (88), Expect = 0.074
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = -1
Query: 490 LRKRCNV-NPAR-GPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 335
LR R ++ NP + GP + R P I+ + +RGM+P+K RG A ++++ G P
Sbjct: 52 LRTRKSISNPKKMGPKYPRRPDDIVRRVIRGMLPYKKPRGVEAFKKIKIEVGVP 105
Score = 36.3 bits (80), Expect = 0.69
Identities = 14/40 (35%), Positives = 27/40 (67%)
Frame = -2
Query: 642 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGN 523
+V++ ++GRLA+ +AK+ L G ++ VV E+ ++GN
Sbjct: 2 VVVNAENAVVGRLASYVAKLALSGEEITVVNAEKAIMTGN 41
>UniRef50_P39473 Cluster: 50S ribosomal protein L13P; n=4;
Thermoprotei|Rep: 50S ribosomal protein L13P -
Sulfolobus acidocaldarius
Length = 148
Score = 38.3 bits (85), Expect = 0.17
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = -2
Query: 642 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISG 526
+++D +LGR++ IAK+L G KV VV E+ ISG
Sbjct: 8 VIVDATNQILGRMSTHIAKLLKSGKKVYVVNAEKAIISG 46
Score = 34.7 bits (76), Expect = 2.1
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -1
Query: 469 NPAR-GPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 335
NP R G R P I+ +TVRGM+P K + GK R L+ Y G P
Sbjct: 66 NPYRQGIRRPRNPINIVKRTVRGMLP-KNKLGKQIYRNLKAYIGIP 110
>UniRef50_Q6L294 Cluster: 50S ribosomal protein L13P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L13P -
Picrophilus torridus
Length = 138
Score = 37.5 bits (83), Expect = 0.30
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -2
Query: 642 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISG 526
I ID H+ GRL++ +AK LL G + +V ++ I+G
Sbjct: 2 IYIDASNHIYGRLSSYVAKKLLNGESITIVNASKVVITG 40
Score = 35.5 bits (78), Expect = 1.2
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -1
Query: 460 RGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDN 320
+GP++ + +IL +++ M+P K G AL+R Y P +N
Sbjct: 60 KGPYYPKTADRILKRSIGDMLPKKKTHGMEALKRCMVYANVPKSLEN 106
>UniRef50_Q85FU2 Cluster: 50S ribosomal protein L13; n=1;
Cyanidioschyzon merolae|Rep: 50S ribosomal protein L13 -
Cyanidioschyzon merolae (Red alga)
Length = 98
Score = 36.7 bits (81), Expect = 0.52
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Frame = -2
Query: 642 IVIDGRGHLLGRLAAVIAKVLLEGNK--VVVVRCEQINISGNFFRNNSSLCHS 490
++I+ + +LGRLA+ + K LL + + +V+ QI ++GN ++N S HS
Sbjct: 1 MLINAKDEILGRLASRVVKTLLTQSVTCIEIVQANQIQVTGNKYKNKSYRRHS 53
>UniRef50_Q4QG46 Cluster: Putative uncharacterized protein; n=2;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 1445
Score = 35.1 bits (77), Expect = 1.6
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = +1
Query: 511 VPKEVARDVDLFAANHNN-----FVPFEKDLGDDCRQTAQQMTTAIDHYGLI 651
VP ++ R+ HNN FVPF ++ +D QT QQ+ +A+ H GL+
Sbjct: 271 VPADMNRNATSNMKGHNNGDPGDFVPFAREEKEDPIQTTQQLYSAVCHAGLV 322
>UniRef50_Q3AW67 Cluster: 50S ribosomal protein L13; n=12;
Bacteria|Rep: 50S ribosomal protein L13 - Synechococcus
sp. (strain CC9902)
Length = 150
Score = 33.9 bits (74), Expect = 3.7
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 442 RAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 329
R P +I+ K ++GM+PH G+ R+L+ Y G P
Sbjct: 96 RIPERIVEKAIKGMLPHNA-LGRQMYRKLKVYKGTEHP 132
>UniRef50_Q2QM14 Cluster: Retrotransposon protein, putative,
Ty3-gypsy subclass, expressed; n=4; Oryza sativa|Rep:
Retrotransposon protein, putative, Ty3-gypsy subclass,
expressed - Oryza sativa subsp. japonica (Rice)
Length = 548
Score = 33.5 bits (73), Expect = 4.9
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = -1
Query: 550 LRTNQHLWQLL*EQLKLMSFLRKRCNVNPARGPFHFRAPSK 428
+RT++HLW+LL + K + LR C VN GP +PSK
Sbjct: 92 VRTDKHLWRLL-VRHKPQNLLRLHCQVNDLEGPIAV-SPSK 130
>UniRef50_Q7V521 Cluster: 50S ribosomal protein L13; n=32;
Bacteria|Rep: 50S ribosomal protein L13 -
Prochlorococcus marinus (strain MIT 9313)
Length = 150
Score = 33.1 bits (72), Expect = 6.4
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 442 RAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 329
R P +I+ K ++GM+PH G+ R+L+ Y G P
Sbjct: 96 RLPERIVEKAIKGMLPHNA-LGRQLFRKLKVYRGPEHP 132
>UniRef50_A1TJ69 Cluster: Ymc-like protein; n=1; Acidovorax avenae
subsp. citrulli AAC00-1|Rep: Ymc-like protein -
Acidovorax avenae subsp. citrulli (strain AAC00-1)
Length = 235
Score = 32.7 bits (71), Expect = 8.5
Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = -3
Query: 230 IGWKYRDVVRKLEDKRKGKAVKRVAYE-KKLKRIHQGC 120
IG++Y+DV+R L R G AV RV E + L+R++ GC
Sbjct: 33 IGYRYKDVIRFLGPCR-GHAVDRVTRELRDLQRLNPGC 69
>UniRef50_Q855Z2 Cluster: Gp80; n=1; Mycobacterium phage
Barnyard|Rep: Gp80 - Mycobacterium phage Barnyard
Length = 1111
Score = 32.7 bits (71), Expect = 8.5
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = -3
Query: 245 RLSHEI--GWKYRDVVRKLEDKRKGKAVKRVAYEKKL 141
+LS EI GWKYR R +RK + VKR+ YE K+
Sbjct: 311 QLSREIAKGWKYRVAQRPDMARRKAEYVKRLQYEFKI 347
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 701,157,407
Number of Sequences: 1657284
Number of extensions: 13946312
Number of successful extensions: 34100
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 33060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34088
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52892566912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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