Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30533
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...   104   1e-23
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...   104   1e-23
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...   101   7e-23
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    29   0.82 
SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit L13...    27   3.3  
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    26   4.4  
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa...    26   4.4  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     26   4.4  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   5.8  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    26   5.8  
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces...    25   7.7  
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom...    25   7.7  

>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score =  104 bits (249), Expect = 1e-23
 Identities = 49/102 (48%), Positives = 62/102 (60%)
 Frame = -1

Query: 559 CGSLRTNQHLWQLL*EQLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTER 380
           C  L  + H ++    +LK +++LRK C  NP+RG FHFRAPS+I  K VRGM+PHKT R
Sbjct: 39  CEELNISGHFFR---NKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTAR 95

Query: 379 GKNALRRLRTYDGCPPPFDNXXXXXXXXXXXVFCLKPGRNYC 254
           G+ AL  L+  +G PPPFD            V  LKPGR YC
Sbjct: 96  GQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYC 137



 Score = 76.6 bits (180), Expect = 3e-15
 Identities = 34/46 (73%), Positives = 41/46 (89%)
 Frame = -2

Query: 648 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRN 511
           K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRN
Sbjct: 6   KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRN 51



 Score = 46.0 bits (104), Expect = 5e-06
 Identities = 21/39 (53%), Positives = 28/39 (71%)
 Frame = -3

Query: 251 VGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKR 135
           VGRLS E+GWKY D+V KLE++RK K+     Y+ KL +
Sbjct: 139 VGRLSSEVGWKYSDIVSKLEERRKVKSA--AFYQAKLAK 175


>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  104 bits (249), Expect = 1e-23
 Identities = 49/102 (48%), Positives = 62/102 (60%)
 Frame = -1

Query: 559 CGSLRTNQHLWQLL*EQLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTER 380
           C  L  + H ++    +LK +++LRK C  NP+RG FHFRAPS+I  K VRGM+PHKT R
Sbjct: 39  CEELNISGHFFR---NKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTAR 95

Query: 379 GKNALRRLRTYDGCPPPFDNXXXXXXXXXXXVFCLKPGRNYC 254
           G+ AL  L+  +G PPPFD            V  LKPGR YC
Sbjct: 96  GQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYC 137



 Score = 76.6 bits (180), Expect = 3e-15
 Identities = 34/46 (73%), Positives = 41/46 (89%)
 Frame = -2

Query: 648 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRN 511
           K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRN
Sbjct: 6   KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRN 51



 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 21/39 (53%), Positives = 28/39 (71%)
 Frame = -3

Query: 251 VGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKR 135
           VGRLS E+GWKY D+V KLE++RK K+     Y+ KL +
Sbjct: 139 VGRLSSEVGWKYNDIVAKLEERRKVKSA--AFYQAKLAK 175


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  101 bits (243), Expect = 7e-23
 Identities = 48/102 (47%), Positives = 61/102 (59%)
 Frame = -1

Query: 559 CGSLRTNQHLWQLL*EQLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTER 380
           C  L  + H ++    +LK +++LRK C  NP+RG FHFRAPS+I  K VRGM+PHKT R
Sbjct: 39  CEELNISGHFFR---NKLKYLAYLRKACRYNPSRGAFHFRAPSRIFTKAVRGMLPHKTTR 95

Query: 379 GKNALRRLRTYDGCPPPFDNXXXXXXXXXXXVFCLKPGRNYC 254
           G  AL+ L+  +G PPPFD            V  LKP R YC
Sbjct: 96  GNIALKNLQALEGIPPPFDKQKRLVVPAALRVLRLKPSRKYC 137



 Score = 73.7 bits (173), Expect = 2e-14
 Identities = 31/46 (67%), Positives = 40/46 (86%)
 Frame = -2

Query: 648 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRN 511
           K ++ID +GHL+GRLA+ +AK LL G KVVVVRCE++NISG+FFRN
Sbjct: 6   KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRN 51



 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 16/27 (59%), Positives = 24/27 (88%)
 Frame = -3

Query: 251 VGRLSHEIGWKYRDVVRKLEDKRKGKA 171
           +GRLS E+GWKY+++V KLE++RK K+
Sbjct: 139 IGRLSSEVGWKYKNIVSKLEERRKIKS 165


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 621 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFF 517
           H L  + AV  K++  G K VV+RC+ I  + +FF
Sbjct: 157 HHLEDVKAVGKKLIKAGCKNVVIRCDDIPFASDFF 191


>SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit
           L13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 573 GNKVVVVRCEQINISGNFFRNNSSLCHS 490
           G+ VVV  C +I ISG    N+    HS
Sbjct: 52  GDVVVVTDCSEIGISGRKLENHKYYSHS 79


>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 274 KPGRNYCM*ADCPMKLDGNTVML 206
           +PGR Y   +D   K DG TV+L
Sbjct: 87  RPGRTYTQISDISAKNDGQTVLL 109


>SPBC13E7.06 |msd1|mug172|spindle pole body protein
           Msd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 331

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = +1

Query: 538 DLFAANHNNFVPFEKDLGDDCRQTAQQMTTAIDHYGLIAKARHFHN 675
           D+ A N       +  L    RQ  QQM T   +YGL+ KAR   N
Sbjct: 126 DVNAKNELTLKALKNQLSVSLRQHEQQMETLKGNYGLV-KARKGRN 170


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 357 SLLRAFLPRSVLCGIIPLTVFHRILDGAL 443
           S L AFLP+  LC +IPL    + L G L
Sbjct: 693 SSLFAFLPQLSLCMLIPLVFGKKNLPGTL 721


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 336 GHPSYVRSLLRAFLPRSVLCGIIP 407
           G+ SY+ + L+AFLP++V   + P
Sbjct: 381 GNESYLSNFLKAFLPKTVCDYLFP 404


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 245 RLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKR 135
           R S E   K  D   K E+KR+ K  K+   EKK K+
Sbjct: 428 RKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKK 464


>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 78  VVKWC-CRPSNTFSPASLVNPLKFLFIGNSLNSLALPLV 191
           V+ +C C+PS  F P   +N + +  +GN ++++  P +
Sbjct: 168 VISFCRCKPSLVFPPHLKINFVAYSLVGN-VDNVQFPYI 205


>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 202 VSLKTRGRARLLRELPMKRNLRGFTKDAGEKVFEGRQ 92
           V L+    +R  +   + RNL+G+ +   EK  +GR+
Sbjct: 213 VDLRDYSNSRFQQNRLLDRNLKGWIQGESEKALKGRR 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,845,888
Number of Sequences: 5004
Number of extensions: 56807
Number of successful extensions: 153
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)