Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30533
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 110 1e-24
07_01_0071 - 522920-523063,524125-524212,524289-524677 107 1e-23
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769... 89 2e-18
11_04_0056 + 12942802-12942920,12943022-12943115 42 6e-04
04_03_0232 - 13049649-13052807 31 0.84
01_06_0707 + 31355929-31356244,31356766-31356992,31357081-313572... 29 2.6
10_01_0332 - 3635909-3635912,3635947-3636003,3636004-3636053,363... 29 4.5
05_04_0347 + 20479682-20479753,20480136-20480813,20481143-204821... 28 6.0
03_02_0619 + 9904405-9904586,9905315-9906764,9907320-9907509,990... 28 6.0
01_01_0346 + 2756652-2756830,2759178-2759405,2759818-2759905,275... 28 6.0
>03_06_0010 +
30990002-30990273,30990372-30990488,30990581-30990668,
30991505-30991648
Length = 206
Score = 110 bits (264), Expect = 1e-24
Identities = 47/91 (51%), Positives = 63/91 (69%)
Frame = -1
Query: 523 LL*EQLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYD 344
L+ +++K + FLRKR N P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL+ Y+
Sbjct: 52 LVRQKMKYLRFLRKRMNTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYE 111
Query: 343 GCPPPFDNXXXXXXXXXXXVFCLKPGRNYCM 251
G PPP+D V L+PG YC+
Sbjct: 112 GVPPPYDRTKRMVIPDALKVLRLQPGHKYCL 142
Score = 60.1 bits (139), Expect = 2e-09
Identities = 28/54 (51%), Positives = 38/54 (70%)
Frame = -2
Query: 675 VVKMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFR 514
+V +G +V+D R H+LGRLA++IAK LL G +VVVVRCE+I +SG R
Sbjct: 1 MVSGSGVCAPRVVVDARHHMLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVR 54
Score = 45.6 bits (103), Expect = 4e-05
Identities = 19/36 (52%), Positives = 29/36 (80%)
Frame = -3
Query: 251 VGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKK 144
+G+LS E+GW Y D +R+LE+KRK KA +VAY+++
Sbjct: 143 LGQLSKEVGWNYYDTIRELEEKRKEKA--KVAYDRR 176
>07_01_0071 - 522920-523063,524125-524212,524289-524677
Length = 206
Score = 107 bits (256), Expect = 1e-23
Identities = 46/91 (50%), Positives = 60/91 (65%)
Frame = -1
Query: 523 LL*EQLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYD 344
L+ +++K + FLRKR N P+ GP HFRAPS+I W+TVRGMIPHKT RG+ AL L+ +D
Sbjct: 52 LVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSRIFWRTVRGMIPHKTPRGEAALANLKAFD 111
Query: 343 GCPPPFDNXXXXXXXXXXXVFCLKPGRNYCM 251
G PPP+D V L+PG YC+
Sbjct: 112 GVPPPYDRTKRMVVPDALKVLRLQPGHKYCL 142
Score = 61.3 bits (142), Expect = 7e-10
Identities = 27/54 (50%), Positives = 39/54 (72%)
Frame = -2
Query: 675 VVKMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFR 514
+V +G + +V+D R H+LGRLA+++AK LL G +VVVVRCE++ ISG R
Sbjct: 1 MVSGSGLCTRRVVVDARHHMLGRLASLVAKELLNGQRVVVVRCEEMCISGGLVR 54
Score = 47.6 bits (108), Expect = 9e-06
Identities = 20/36 (55%), Positives = 29/36 (80%)
Frame = -3
Query: 251 VGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKK 144
+G+LS E+GW Y D +R+LE+KRK KA +VAYE++
Sbjct: 143 LGQLSKEVGWNYHDTIRELEEKRKEKA--KVAYERR 176
>03_06_0007 -
30975910-30975921,30976660-30976747,30976850-30976966,
30977081-30977154
Length = 96
Score = 89.4 bits (212), Expect = 2e-18
Identities = 38/75 (50%), Positives = 49/75 (65%)
Frame = -1
Query: 475 NVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXX 296
N P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL+ Y+ PP+D
Sbjct: 2 NTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPD 61
Query: 295 XXXVFCLKPGRNYCM 251
V L+PG YC+
Sbjct: 62 ALKVLRLQPGHKYCL 76
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 251 VGRLSHEIGWKYRDVVR 201
+G+LS E+GW Y D +R
Sbjct: 77 LGQLSKEVGWNYYDTIR 93
>11_04_0056 + 12942802-12942920,12943022-12943115
Length = 70
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = -1
Query: 382 RGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXVFCLKPGRNYCM 251
RG+ AL RL+ Y+G PPP+D V L+PG YC+
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCL 52
>04_03_0232 - 13049649-13052807
Length = 1052
Score = 31.1 bits (67), Expect = 0.84
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 173 PCPSSCLQAYEQHHGISIQFHGTVCLH 253
PCPS+CL+ Y H IS+Q LH
Sbjct: 763 PCPSNCLKPYSAHCYISVQDEMQTNLH 789
>01_06_0707 +
31355929-31356244,31356766-31356992,31357081-31357257,
31357355-31357510,31357778-31358054,31358192-31358306,
31360349-31360634,31361196-31361381,31361663-31361833,
31362307-31362426
Length = 676
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 442 RAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFD 323
R P +I+ VRGM+P K G+ L+ Y G P +
Sbjct: 619 RIPERIIEHAVRGMLP-KGRLGRRLFTHLKVYKGAEHPHE 657
>10_01_0332 -
3635909-3635912,3635947-3636003,3636004-3636053,
3637887-3637945,3638054-3638114,3638938-3640479
Length = 590
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = -2
Query: 648 KAIVIDGRGHLLGRLAAVIAKVLLEGNK---VVVVRCEQINISGNFFRNNSSLCHSCV 484
K+ + G G G +A +A+ LL+ N VVV E I ++ F + S L +C+
Sbjct: 241 KSFNLGGMGCSAGLIAVDLARDLLQANAGALAVVVSTENITLNWYFGNDRSMLLSNCI 298
>05_04_0347 +
20479682-20479753,20480136-20480813,20481143-20482195,
20482345-20482406,20482491-20482541,20482635-20482719,
20483253-20483342,20483472-20483563,20483704-20483728
Length = 735
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = -1
Query: 475 NVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 329
NV R P FR P+K + +T R I R ++T PPP
Sbjct: 652 NVRANRVPESFRKPNKGIQETARSQISSSKSATPAQTRSIKTRAPNPPP 700
>03_02_0619 +
9904405-9904586,9905315-9906764,9907320-9907509,
9909578-9910164
Length = 802
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -1
Query: 130 TKDAGEKVFEGRQHHFTTIHPNPYGITIRTKKL*PKIKPFG 8
+++ E + + R HHF P+ ++ KKL P + P+G
Sbjct: 120 SEEPQEAIVKERSHHFPKGLPSLKRSALKLKKLMPSMSPYG 160
>01_01_0346 +
2756652-2756830,2759178-2759405,2759818-2759905,
2759998-2760094,2760353-2760393
Length = 210
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/64 (21%), Positives = 31/64 (48%)
Frame = -3
Query: 635 SMAVVICWAVWRQSSPRSFSKGTKLLWFAANKSTSLATSLGTTQAYVIPA*EVQRESCSW 456
++ ++ W +W++ + R F++ + W K + T+L IPA ++R+ S
Sbjct: 75 TVVTLVAWTIWKECNGRVFNQQQR-TWVDIVKGMAAETALWRQANSAIPALILRRDFGSQ 133
Query: 455 TFPF 444
P+
Sbjct: 134 NRPY 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,254,894
Number of Sequences: 37544
Number of extensions: 401898
Number of successful extensions: 950
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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