Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30533
         (682 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   7e-05
SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)             31   0.65 
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  

>SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = -1

Query: 403 MIPHKTERGKNALRRLRTYDGCPPPFD 323
           MIPHKT++G  A+ R++ +DG PPP+D
Sbjct: 1   MIPHKTKKGTEAMNRMKVFDGVPPPYD 27


>SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)
          Length = 1459

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -3

Query: 635 SMAVVICWAVWRQSSPRSFSKGTKLLWFAANKSTSLATSLGTTQAY 498
           SM+V +C ++W  + P  F    +L+W+  N   S++ SLG +  Y
Sbjct: 265 SMSVSLCQSIWYHTHPSVFVSLGQLIWY--NTHPSVSVSLGQSIWY 308


>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6500

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -2

Query: 642  IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNNSSLCHSCVR 481
            +V    G +   L   I  V  +GN        +    GN ++  +SLCH CVR
Sbjct: 2553 VVKASNGEMPEDLRDRITAVAFKGNTTSTDERHREGALGNVWQKKASLCHRCVR 2606


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,913,498
Number of Sequences: 59808
Number of extensions: 439455
Number of successful extensions: 1100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)