Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30533
(682 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46381-2|CAA86515.1| 202|Caenorhabditis elegans Hypothetical pr... 107 1e-23
U31528-1|AAA74904.1| 202|Caenorhabditis elegans 60S ribosomal p... 107 1e-23
U70857-6|AAD31051.1| 189|Caenorhabditis elegans Hypothetical pr... 29 3.1
AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical... 28 7.1
U40409-3|ABO16455.1| 681|Caenorhabditis elegans Related to yeas... 27 9.4
U40409-2|AAA81388.3| 759|Caenorhabditis elegans Related to yeas... 27 9.4
U40409-1|ABO16456.1| 807|Caenorhabditis elegans Related to yeas... 27 9.4
>Z46381-2|CAA86515.1| 202|Caenorhabditis elegans Hypothetical
protein M01F1.2 protein.
Length = 202
Score = 107 bits (256), Expect = 1e-23
Identities = 47/87 (54%), Positives = 58/87 (66%)
Frame = -1
Query: 511 QLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPP 332
+LK MSFLRKRCN+NPARG FH+RAP KI W+TVRGM+PHKT RG AL+ LR Y+G P
Sbjct: 52 KLKYMSFLRKRCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPA 111
Query: 331 PFDNXXXXXXXXXXXVFCLKPGRNYCM 251
+ F L+P R +C+
Sbjct: 112 KYQK-TKSLHAPSASRFRLQPRRKFCV 137
Score = 74.5 bits (175), Expect = 6e-14
Identities = 33/50 (66%), Positives = 44/50 (88%)
Frame = -2
Query: 660 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRN 511
G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+
Sbjct: 2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRS 51
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/40 (52%), Positives = 29/40 (72%)
Frame = -3
Query: 251 VGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRI 132
VGRLSHE+GW+++DVV KLE KRK K +KK+ ++
Sbjct: 138 VGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKL 177
>U31528-1|AAA74904.1| 202|Caenorhabditis elegans 60S ribosomal
protein L13A protein.
Length = 202
Score = 107 bits (256), Expect = 1e-23
Identities = 47/87 (54%), Positives = 58/87 (66%)
Frame = -1
Query: 511 QLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPP 332
+LK MSFLRKRCN+NPARG FH+RAP KI W+TVRGM+PHKT RG AL+ LR Y+G P
Sbjct: 52 KLKYMSFLRKRCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPA 111
Query: 331 PFDNXXXXXXXXXXXVFCLKPGRNYCM 251
+ F L+P R +C+
Sbjct: 112 KYQK-TKSLHAPSASRFRLQPRRKFCV 137
Score = 74.5 bits (175), Expect = 6e-14
Identities = 33/50 (66%), Positives = 44/50 (88%)
Frame = -2
Query: 660 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRN 511
G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+
Sbjct: 2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRS 51
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/40 (52%), Positives = 29/40 (72%)
Frame = -3
Query: 251 VGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRI 132
VGRLSHE+GW+++DVV KLE KRK K +KK+ ++
Sbjct: 138 VGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKL 177
>U70857-6|AAD31051.1| 189|Caenorhabditis elegans Hypothetical
protein C10G8.3 protein.
Length = 189
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 173 PCPSSCLQAYEQHHGISIQFHGTVCLH 253
PCP E+ HGI++Q G CLH
Sbjct: 143 PCPIGQTIVREKIHGITVQLLGKRCLH 169
>AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical
protein B0511.12 protein.
Length = 1634
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 93 CRPSNTFSPASLVNPLKFLFIGNSL 167
CR + TFSP S NPL F+ S+
Sbjct: 384 CRVAYTFSPTSTQNPLFSTFVATSV 408
>U40409-3|ABO16455.1| 681|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 41, isoform b
protein.
Length = 681
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 145 NLRGFTKDAGEKVFE-GRQHHFTTIHPNPYGITIRTKKL*PK 23
NL FT D G +V+E G + T++ P+ +R+ + PK
Sbjct: 60 NLIAFTNDTGTRVYERGAERIITSVQPSHDVDRVRSSRSPPK 101
>U40409-2|AAA81388.3| 759|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 41, isoform a
protein.
Length = 759
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 145 NLRGFTKDAGEKVFE-GRQHHFTTIHPNPYGITIRTKKL*PK 23
NL FT D G +V+E G + T++ P+ +R+ + PK
Sbjct: 60 NLIAFTNDTGTRVYERGAERIITSVQPSHDVDRVRSSRSPPK 101
>U40409-1|ABO16456.1| 807|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 41, isoform c
protein.
Length = 807
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 145 NLRGFTKDAGEKVFE-GRQHHFTTIHPNPYGITIRTKKL*PK 23
NL FT D G +V+E G + T++ P+ +R+ + PK
Sbjct: 108 NLIAFTNDTGTRVYERGAERIITSVQPSHDVDRVRSSRSPPK 149
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,956,272
Number of Sequences: 27780
Number of extensions: 331659
Number of successful extensions: 845
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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