Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30533
(682 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC) ri... 110 7e-25
At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA) si... 108 4e-24
At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD) 107 7e-24
At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB) si... 107 7e-24
At3g10270.1 68416.m01231 DNA topoisomerase, ATP-hydrolyzing, put... 29 2.8
At2g38970.1 68415.m04789 zinc finger (C3HC4-type RING finger) fa... 29 3.8
At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containi... 28 6.6
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 28 6.6
At1g78630.1 68414.m09164 ribosomal protein L13 family protein si... 27 8.7
At1g01710.1 68414.m00089 acyl-CoA thioesterase family protein co... 27 8.7
>At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC)
ribosomal protein L13a -Lupinus luteus,PID:e1237871
Length = 206
Score = 110 bits (265), Expect = 7e-25
Identities = 59/143 (41%), Positives = 78/143 (54%)
Frame = -1
Query: 523 LL*EQLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYD 344
L+ +++K M FLRKR N P+ GP HFRAPSKI W+TVRGMIPHKT+RG AL RL+ ++
Sbjct: 52 LVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFE 111
Query: 343 GCPPPFDNXXXXXXXXXXXVFCLKPGRNYCM*ADCPMKLDGNTVMLFVSLKTRGRARLLR 164
G PPP+D V L+ G YC+ ++ N L+T+ + R
Sbjct: 112 GIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGRLSSEVGWNHYDTIKELETKRKERSQV 171
Query: 163 ELPMKRNLRGFTKDAGEKVFEGR 95
K+ L A EKV E R
Sbjct: 172 MYERKKQLNKLRTKA-EKVAEER 193
Score = 60.9 bits (141), Expect = 8e-10
Identities = 29/54 (53%), Positives = 38/54 (70%)
Frame = -2
Query: 675 VVKMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFR 514
+V +G K +V+DGR H+LGRLA+ AK LL G +VVVVRCE+I +SG R
Sbjct: 1 MVSGSGICAKRVVVDGRHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVR 54
>At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA)
similar to ribosomal protein L13A GB:O49885 [Lupinus
luteus]
Length = 206
Score = 108 bits (259), Expect = 4e-24
Identities = 57/141 (40%), Positives = 76/141 (53%)
Frame = -1
Query: 523 LL*EQLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYD 344
L+ +++K M FLRKR N P+ GP HFRAPSKI W+TVRGMIPHKT+RG NAL RL+ ++
Sbjct: 52 LVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFE 111
Query: 343 GCPPPFDNXXXXXXXXXXXVFCLKPGRNYCM*ADCPMKLDGNTVMLFVSLKTRGRARLLR 164
G P P+D V L+ G YC+ ++ N L+ + + R
Sbjct: 112 GVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELENKRKERAQA 171
Query: 163 ELPMKRNLRGFTKDAGEKVFE 101
K+ L A EKV E
Sbjct: 172 VYERKKQLSKLRAKA-EKVAE 191
Score = 61.7 bits (143), Expect = 4e-10
Identities = 28/54 (51%), Positives = 38/54 (70%)
Frame = -2
Query: 675 VVKMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFR 514
+V +G K +V+D R H+LGRLA+V+AK LL G +VVVRCE+I +SG R
Sbjct: 1 MVSGSGICAKRVVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVR 54
>At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD)
Length = 206
Score = 107 bits (257), Expect = 7e-24
Identities = 58/141 (41%), Positives = 76/141 (53%)
Frame = -1
Query: 523 LL*EQLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYD 344
L+ +++K M FLRKR N P+ GP HFRAPSKI W+TVRGMIPHKT+RG AL RL+ Y+
Sbjct: 52 LVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYE 111
Query: 343 GCPPPFDNXXXXXXXXXXXVFCLKPGRNYCM*ADCPMKLDGNTVMLFVSLKTRGRARLLR 164
G P P+D V L+ G YC+ ++ N L+T+ + R
Sbjct: 112 GVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELETKRKERAHV 171
Query: 163 ELPMKRNLRGFTKDAGEKVFE 101
K+ L A EKV E
Sbjct: 172 VYERKKQLNKLRVKA-EKVAE 191
Score = 63.3 bits (147), Expect = 1e-10
Identities = 28/54 (51%), Positives = 39/54 (72%)
Frame = -2
Query: 675 VVKMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFR 514
+V +G +K +V+D R H+LGRLA++ AK LL G KVV+VRCE+I +SG R
Sbjct: 1 MVSGSGICSKRVVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVR 54
>At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB)
similar to 60S RIBOSOMAL PROTEIN L13A GB:P35427 from
[Rattus norvegicus]
Length = 206
Score = 107 bits (257), Expect = 7e-24
Identities = 57/141 (40%), Positives = 76/141 (53%)
Frame = -1
Query: 523 LL*EQLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYD 344
L+ +++K M FLRKR N P+ GP HFRAPSKI W+TVRGMIPHKT+RG AL RL+ ++
Sbjct: 52 LVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFE 111
Query: 343 GCPPPFDNXXXXXXXXXXXVFCLKPGRNYCM*ADCPMKLDGNTVMLFVSLKTRGRARLLR 164
G PPP+D V L+ G YC+ ++ N L+ + + R
Sbjct: 112 GVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELEVKRKERSQA 171
Query: 163 ELPMKRNLRGFTKDAGEKVFE 101
K+ L A EKV E
Sbjct: 172 LYERKKQLTKLRAKA-EKVAE 191
Score = 61.7 bits (143), Expect = 4e-10
Identities = 28/54 (51%), Positives = 38/54 (70%)
Frame = -2
Query: 675 VVKMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFR 514
+V +G +K +V+D R H+ GRLA++IAK LL G VVVVRCE+I +SG R
Sbjct: 1 MVSGSGICSKRVVVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVR 54
>At3g10270.1 68416.m01231 DNA topoisomerase, ATP-hydrolyzing,
putative / DNA topoisomerase II, putative / DNA gyrase,
putative similar to SP|O50627 DNA gyrase subunit B (EC
5.99.1.3) {Bacillus halodurans}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00204: DNA topoisomerase II
(N-terminal region), PF00986: DNA gyrase, B subunit,
carboxyl terminus, PF01751: Toprim domain
Length = 657
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -2
Query: 666 MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFR 514
M G++N IDG H+ G A++ + K+ V++ + I++SG R
Sbjct: 286 MLGYANSIRTIDGGTHIEGVKASLTRTLNSLAKKLKVIKEKDISLSGEHVR 336
>At2g38970.1 68415.m04789 zinc finger (C3HC4-type RING finger)
family protein very low similarity to SP|P97280
Inter-alpha-trypsin inhibitor heavy chain H3 precursor
{Mesocricetus auratus}; contains Pfam profiles PF00097:
Zinc finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 692
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +1
Query: 226 PISWDSLPTCSNYG-QVSDRRHVEQQALQHVDGYQREEGTHHMYVAS*EHSCHALFCVGS 402
P++W PT S++G ++S + +E G H ++ A HS H C+ S
Sbjct: 45 PLNWPMTPTPSSHGLKLSRNSSKSSKTCSICLNKMKEGGGHALFTAECSHSFH-FHCIAS 103
>At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 603
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -3
Query: 224 WKYRDVVRKLEDKRKGKAVKRVAYEKKLKRIHQGCW*EGVRRATTPFH 81
W+Y D +RK+ RK V + + +H+ +GV+ ATT H
Sbjct: 449 WEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLH 496
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -3
Query: 230 IGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRIHQG 123
+G YRD V E GK+VK+V Y+ K + H+G
Sbjct: 911 VGGYYRDGVGYSETN--GKSVKKVIYQAKTQPSHRG 944
>At1g78630.1 68414.m09164 ribosomal protein L13 family protein
similar to ribosomal protein L13 GI:170132 from
[Spinacia oleracea]
Length = 241
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 442 RAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFD 323
R P +I+ VRGM+P K G+ L+ Y G P +
Sbjct: 185 RIPERIVEHAVRGMLP-KGRLGRALFNHLKVYKGPDHPHE 223
>At1g01710.1 68414.m00089 acyl-CoA thioesterase family protein
contains Pfam profiles: PF02551 acyl-CoA thioesterase,
PF00027 cyclic nucleotide-binding domain
Length = 427
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -1
Query: 454 PFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGC 338
P + PS L K + ++P + +G +R +T+DGC
Sbjct: 14 PLLQKLPSSSLKKIAQVVVPKRYGKGDYVVREDQTWDGC 52
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,294,596
Number of Sequences: 28952
Number of extensions: 314571
Number of successful extensions: 849
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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