Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30532
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    29   0.58 
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    28   1.8  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    27   2.3  
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces...    27   3.1  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    26   5.4  
SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c...    26   7.1  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    25   9.4  

>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -1

Query: 340 VLRREPILHQHQGR-HIRRMSLHLDLQILPNVQCLVVDGFLVSISAGV 200
           +L + P LH    R  IR +S H+D +IL  +    + GF+  +S G+
Sbjct: 450 LLEKNPTLHLSLNRLSIRNISRHIDPKILAMLGRQAIRGFMDDVSKGL 497


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 71  SECSMCSPLDSGKMPPWILLHSL 3
           SE +MC PL  G  P W L+  L
Sbjct: 268 SEMAMCYPLMQGHQPEWALVRGL 290


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 684 YLIFWNNFWTLLAVIQI*G 740
           Y+ FW+N WTLL+  +I G
Sbjct: 416 YVTFWSNIWTLLSRREILG 434


>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 129

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 516 ISFFPCARRLLRRLGRFCELIHNFFR*PVIVYFTGCSSFNGL 391
           +SFF    R+L  +  F  L+   F  P+I +F  C  F  L
Sbjct: 55  VSFFLRKDRMLGSISFFSGLLLTLFHFPIIGFFVECLGFFNL 96


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 442 KEIVNQLTKSPKTPKQSPRARKERDQQATTKKSFEVMIKRDIKHK 576
           KEI  Q +K+  +PK+S +  K       +KKS +   K   K +
Sbjct: 38  KEIAKQSSKTDVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEE 82


>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +2

Query: 191 NYRDASGNAYQEAVYNQTLNIGKYLKV*MERHSSYMSSLVLVEYWLSSQDSKLSHH 358
           N R+AS N Y     N  +NI + L +     S+ +S  +   Y + S  S  S H
Sbjct: 184 NTREASNNTYLYGFSNNFINISRTLNLRYPSASASISDSLPPPYQVLSVPSVTSTH 239


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 529 SSPADLFLSLRAATASASWEI 467
           SSPADL  S   A AS+ WE+
Sbjct: 731 SSPADLIASDPRAYASSIWEV 751


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,139,610
Number of Sequences: 5004
Number of extensions: 59900
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)