Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30532
         (793 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3675| Best HMM Match : TRAP_alpha (HMM E-Value=0)                  113   2e-25
SB_53086| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_36278| Best HMM Match : Homeobox (HMM E-Value=4.8e-30)              29   4.3  
SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.3  
SB_28123| Best HMM Match : zf-NF-X1 (HMM E-Value=0.24)                 29   4.3  
SB_55836| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_24124| Best HMM Match : DUF1213 (HMM E-Value=3.9)                   29   5.7  
SB_56219| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   10.0 
SB_49326| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   10.0 
SB_17296| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   10.0 
SB_55380| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   10.0 
SB_30698| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   10.0 

>SB_3675| Best HMM Match : TRAP_alpha (HMM E-Value=0)
          Length = 667

 Score =  113 bits (272), Expect = 2e-25
 Identities = 46/83 (55%), Positives = 64/83 (77%)
 Frame = +2

Query: 5   DYVVESMEASFRYPMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNV 184
           D++V+ MEAS RYP DY+YYIQNFTA  YN  VKP  +A+F Y+F P+E+F GRPFGL++
Sbjct: 179 DFMVDMMEASLRYPQDYSYYIQNFTAFQYNTVVKPGHQASFEYAFRPHESFGGRPFGLSI 238

Query: 185 QLNYRDASGNAYQEAVYNQTLNI 253
            L Y+D  G  Y++AV+N+T+ +
Sbjct: 239 NLLYKDTDGKMYRDAVFNETVQL 261



 Score = 36.3 bits (80), Expect = 0.028
 Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
 Frame = +1

Query: 256 EVSEGLDGETFFLYVFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETGTA--SEVDY 429
           E  EG+DGETFFLY+F                                E GT    ++DY
Sbjct: 263 ESDEGMDGETFFLYLF-IAAIALLLVMAAHYGLTSIKAFKKSSSKAPIEMGTQQDGDIDY 321

Query: 430 DWLPKEIVNQ 459
           +WLPKE   +
Sbjct: 322 EWLPKETTTE 331


>SB_53086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 667

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 79  GEVLNVVCVVHWIAERCLH 23
           G  L V+C   W+ ERCLH
Sbjct: 142 GFTLQVICSQEWVRERCLH 160


>SB_36278| Best HMM Match : Homeobox (HMM E-Value=4.8e-30)
          Length = 166

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
 Frame = +1

Query: 412 ASEVDYDWLPKEIVNQLTKSPKTPKQS-------PRARKERDQQATTKKSFEVMIKRDIK 570
           AS+VD     +E  +   + PK+  +S        RA++ + ++A T  ++E ++  + K
Sbjct: 7   ASDVDISRSDQETTDAAGEDPKSSSKSKRKRGSTERAKEGKPRRARTAFTYEQLVALENK 66

Query: 571 HKPVVHTSVCE 603
            K   + SVCE
Sbjct: 67  FKSTRYLSVCE 77


>SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 786

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 436 LPKEIVNQLTKSPKTPKQSPRARKERDQQATTKK 537
           L K + + L K  KTP + P+  +ER+Q+   KK
Sbjct: 619 LEKYVQSCLRKKHKTPAKKPKNAEEREQEQARKK 652


>SB_28123| Best HMM Match : zf-NF-X1 (HMM E-Value=0.24)
          Length = 453

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 788 KCSTECPPKKPKCQRKTLNLNNGQKCPE 705
           +C   CP K  KC+   + L  G+KCPE
Sbjct: 100 RCDKPCPYKIEKCKHPCIGL-CGEKCPE 126



 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 785 CSTECPPKKPKCQRKTLNLNNGQKCPE 705
           C+  CPP K  CQ K  +    +KC E
Sbjct: 44  CTKNCPPCKEGCQNKCTHSECKKKCGE 70


>SB_55836| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
 Frame = +1

Query: 400 ETGTASEVDYDWLPKEIVNQ--LTKSPKTPKQSPRARKERDQQATTKKS---FEVMIKRD 564
           ET T  + +    P E +N   +  SP+ PK SP+  K  D  ++ K++   ++  + + 
Sbjct: 63  ETTTEGKSEIVPSPSEAMNATFIKNSPEVPKSSPKQTKNSDSPSSLKENDTYYKAQVMQQ 122

Query: 565 IKHK 576
           +++K
Sbjct: 123 LENK 126


>SB_24124| Best HMM Match : DUF1213 (HMM E-Value=3.9)
          Length = 283

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +1

Query: 409 TASEVDYDWLPKEIVNQLTKSPKTPKQ-SPR--ARKERDQQATTKKSFEVMIKRDIKHKP 579
           T+   D D    +   Q T SPK  KQ +PR  + K++D+QAT+ K+ +    R    KP
Sbjct: 123 TSKPQDQDKQSTDQDKQAT-SPKISKQQAPRQASNKQQDKQATSPKTSKQQAPRQASRKP 181


>SB_56219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 14/57 (24%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = +1

Query: 442 KEIVNQLTKSPKTPKQSPRARKERDQQATT--KKSFEVMIKRDIKHKPVVHTSVCEM 606
           +E +  + + PK+ + SP ++KER  Q++     +FE+M+  + K    + +++  M
Sbjct: 179 EEHIAVVIEPPKSRRLSPGSQKERSPQSSQSGNSNFEMMMALEAKRSETLQSAIMIM 235


>SB_49326| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 400 ETGTASEVDYDWLPKEIVNQLTKSPKTPKQSPRARKERDQ 519
           ETG +    YD LP ++   +T  P   +   +A++ER++
Sbjct: 3   ETGVSKPSFYDLLPFQVYRLVTSLPSRYRSYKQAKEERER 42


>SB_17296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 74

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 14/57 (24%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = +1

Query: 442 KEIVNQLTKSPKTPKQSPRARKERDQQATT--KKSFEVMIKRDIKHKPVVHTSVCEM 606
           +E +  + + PK+ + SP ++KER  Q++     +FE+M+  + K    + +++  M
Sbjct: 15  EEHIAVVIEPPKSRRLSPGSQKERSPQSSQSGNSNFEMMMALEAKRSETLQSAIMIM 71


>SB_55380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 14/57 (24%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = +1

Query: 442 KEIVNQLTKSPKTPKQSPRARKERDQQATT--KKSFEVMIKRDIKHKPVVHTSVCEM 606
           +E +  + + PK+ + SP ++KER  Q++     +FE+M+  + K    + +++  M
Sbjct: 15  EEHIAVVIEPPKSRRLSPGSQKERSPQSSQSGNSNFEMMMALEAKRSETLQSAIMIM 71


>SB_30698| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 14/57 (24%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = +1

Query: 442 KEIVNQLTKSPKTPKQSPRARKERDQQATT--KKSFEVMIKRDIKHKPVVHTSVCEM 606
           +E +  + + PK+ + SP ++KER  Q++     +FE+M+  + K    + +++  M
Sbjct: 76  EEHIAVVIEPPKSRRLSPGSQKERSPQSSQSGNSNFEMMMALEAKRSETLQSAIMIM 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,227,402
Number of Sequences: 59808
Number of extensions: 442506
Number of successful extensions: 1254
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)