Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30532
(793 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024852-1|AAK66027.1| 257|Caenorhabditis elegans Hypothetical ... 103 1e-22
U64834-1|AAL06027.1| 192|Caenorhabditis elegans Hypothetical pr... 28 6.7
AL021488-11|CAN86609.1| 1245|Caenorhabditis elegans Hypothetical... 28 8.8
AL021488-10|CAA16368.2| 1247|Caenorhabditis elegans Hypothetical... 28 8.8
AL021488-9|CAC42378.2| 1245|Caenorhabditis elegans Hypothetical ... 28 8.8
AL021483-11|CAN86637.1| 1245|Caenorhabditis elegans Hypothetical... 28 8.8
AL021483-10|CAA16349.2| 1247|Caenorhabditis elegans Hypothetical... 28 8.8
AL021483-9|CAC42374.2| 1245|Caenorhabditis elegans Hypothetical ... 28 8.8
>AC024852-1|AAK66027.1| 257|Caenorhabditis elegans Hypothetical
protein Y71F9AM.6 protein.
Length = 257
Score = 103 bits (248), Expect = 1e-22
Identities = 45/83 (54%), Positives = 59/83 (71%)
Frame = +2
Query: 5 DYVVESMEASFRYPMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNV 184
D+VV+ E SFR+P D++Y++QNFT YNR V PK+E T Y F +E FAGRP GL V
Sbjct: 86 DFVVKYAETSFRFPTDHSYHLQNFTRGEYNRRVAPKEEVTLDYGFYAHETFAGRPVGLVV 145
Query: 185 QLNYRDASGNAYQEAVYNQTLNI 253
++Y+DA GN + VYNQT+NI
Sbjct: 146 NVHYQDADGNVFVNNVYNQTINI 168
Score = 39.9 bits (89), Expect = 0.002
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 EVSEGLDGETFFLYVFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETGTASEVDYDW 435
E G GET FL++F E GT+SEVD++W
Sbjct: 170 EDDSGFSGETGFLFIFFVALSIGGLYLSNQFLSKLSRKSGLSKRRVV-EQGTSSEVDFEW 228
Query: 436 LPKEIV-NQLTKSPKTPKQSPRARK 507
+P++ V N+ +SP T SP+ARK
Sbjct: 229 IPRDAVKNKEKRSPAT--VSPKARK 251
>U64834-1|AAL06027.1| 192|Caenorhabditis elegans Hypothetical
protein F54D11.4 protein.
Length = 192
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +1
Query: 400 ETGTASEVDYDWLPKEIVNQLTKSPKTPKQSPR--ARKERDQQATTKKSF 543
E+ TAS +EIV+ +K +TPK+SPR + ++R+++ KK F
Sbjct: 45 ESSTASAAKNPVKEEEIVH--SKPERTPKRSPRSPSTEKREKRNKAKKRF 92
>AL021488-11|CAN86609.1| 1245|Caenorhabditis elegans Hypothetical
protein Y45F10A.6c protein.
Length = 1245
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 335 QDSKLSHHWPDV-DHHVQCLSPLKLEQPVK*TMTGYLKKL*INSQNL 472
++ ++ HW V H V + PL+ E+ V+ +T ++ L NS+ +
Sbjct: 79 EEKEIEEHWNHVLQHFVPAIEPLQFEKDVRRYVTTKVESLANNSEEV 125
>AL021488-10|CAA16368.2| 1247|Caenorhabditis elegans Hypothetical
protein Y45F10A.6a protein.
Length = 1247
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 335 QDSKLSHHWPDV-DHHVQCLSPLKLEQPVK*TMTGYLKKL*INSQNL 472
++ ++ HW V H V + PL+ E+ V+ +T ++ L NS+ +
Sbjct: 79 EEKEIEEHWNHVLQHFVPAIEPLQFEKDVRRYVTTKVESLANNSEEV 125
>AL021488-9|CAC42378.2| 1245|Caenorhabditis elegans Hypothetical
protein Y45F10A.6b protein.
Length = 1245
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 335 QDSKLSHHWPDV-DHHVQCLSPLKLEQPVK*TMTGYLKKL*INSQNL 472
++ ++ HW V H V + PL+ E+ V+ +T ++ L NS+ +
Sbjct: 79 EEKEIEEHWNHVLQHFVPAIEPLQFEKDVRRYVTTKVESLANNSEEV 125
>AL021483-11|CAN86637.1| 1245|Caenorhabditis elegans Hypothetical
protein Y45F10A.6c protein.
Length = 1245
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 335 QDSKLSHHWPDV-DHHVQCLSPLKLEQPVK*TMTGYLKKL*INSQNL 472
++ ++ HW V H V + PL+ E+ V+ +T ++ L NS+ +
Sbjct: 79 EEKEIEEHWNHVLQHFVPAIEPLQFEKDVRRYVTTKVESLANNSEEV 125
>AL021483-10|CAA16349.2| 1247|Caenorhabditis elegans Hypothetical
protein Y45F10A.6a protein.
Length = 1247
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 335 QDSKLSHHWPDV-DHHVQCLSPLKLEQPVK*TMTGYLKKL*INSQNL 472
++ ++ HW V H V + PL+ E+ V+ +T ++ L NS+ +
Sbjct: 79 EEKEIEEHWNHVLQHFVPAIEPLQFEKDVRRYVTTKVESLANNSEEV 125
>AL021483-9|CAC42374.2| 1245|Caenorhabditis elegans Hypothetical
protein Y45F10A.6b protein.
Length = 1245
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 335 QDSKLSHHWPDV-DHHVQCLSPLKLEQPVK*TMTGYLKKL*INSQNL 472
++ ++ HW V H V + PL+ E+ V+ +T ++ L NS+ +
Sbjct: 79 EEKEIEEHWNHVLQHFVPAIEPLQFEKDVRRYVTTKVESLANNSEEV 125
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,413,795
Number of Sequences: 27780
Number of extensions: 342554
Number of successful extensions: 1040
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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