Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30532
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    25   1.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.3  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.9  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +3

Query: 168 LSD*MYSLITETPAEMLTRKPSTTRH*TLGSI*RSRWRDILLICL 302
           L+D +  ++ +  +E++  KP   R   L  I +++  D  LIC+
Sbjct: 251 LADKIGKMVNQKFSELIQSKPQHARRKVLAGIVQTKGSDAELICV 295


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 4   RLCSRIHGGIFPLSNGLHILHSELHRVA 87
           R C R H  +   +  ++  H ELHR A
Sbjct: 108 RKCPRRHRPVCASNGKIYANHCELHRAA 135


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +2

Query: 44  PMDYTYYIQNFTALPYNREVKP 109
           P DY Y+  + + +P +   KP
Sbjct: 279 PADYRYFCPDGSKVPIDANTKP 300


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +2

Query: 44  PMDYTYYIQNFTALPYNREVKP 109
           P DY Y+  + + +P +   KP
Sbjct: 279 PADYRYFCPDGSKVPIDANTKP 300


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +2

Query: 44  PMDYTYYIQNFTALPYNREVKP 109
           P DY Y+  + + +P +   KP
Sbjct: 279 PADYRYFCPDGSKVPIDANTKP 300


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,712
Number of Sequences: 438
Number of extensions: 4424
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)