BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30532 (793 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g21160.1 68415.m02510 translocon-associated protein alpha (TR... 42 6e-04 At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal hydrolase-r... 28 8.2 >At2g21160.1 68415.m02510 translocon-associated protein alpha (TRAP alpha) family protein contains Pfam profile: PF03896 translocon-associated protein (TRAP), alpha subunit Length = 258 Score = 41.5 bits (93), Expect = 6e-04 Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 1/81 (1%) Frame = +2 Query: 14 VESMEASFRYPMDYTYYIQNFTALPYNREVKPKQ-EATFAYSFIPNEAFAGRPFGLNVQL 190 V + AS P D+ +QN T L N P +ATF Y F ++ F L + Sbjct: 100 VMGIRASVHLPYDHKLLVQNLTMLRLNNASIPTSLQATFPYIFAVSQYLQPGAFDLVGYI 159 Query: 191 NYRDASGNAYQEAVYNQTLNI 253 Y D G YQ YN T+ + Sbjct: 160 IY-DVEGKPYQSVFYNGTIEV 179 >At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal hydrolase-related contains Pfam profiles PF00443: Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein of unknown function (DUF629), PF04781: Protein of unknown function (DUF627) Length = 1132 Score = 27.9 bits (59), Expect = 8.2 Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 7/62 (11%) Frame = +1 Query: 415 SEVDYDWLPKEIVNQLTKSPKTPKQSPRARKE---RDQQATTKK----SFEVMIKRDIKH 573 S+ D +++N+L K PK+ P+++++ + ++ TKK S ++ + ++H Sbjct: 700 SKAKSDAAEADLLNELEKEKLQPKEKPQSKEKPQSKKRRDRTKKKPSTSISSLLDKTVEH 759 Query: 574 KP 579 KP Sbjct: 760 KP 761 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,346,428 Number of Sequences: 28952 Number of extensions: 313691 Number of successful extensions: 783 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 758 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 782 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1785055200 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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