Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30531
(784 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 136 8e-31
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 134 3e-30
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 106 7e-22
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 88 2e-16
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 75 3e-12
UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1; ... 66 1e-09
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 65 2e-09
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 64 4e-09
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 51 4e-05
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 48 2e-04
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 47 5e-04
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 46 0.001
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 44 0.004
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 41 0.030
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 40 0.053
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 40 0.070
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 40 0.070
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 40 0.093
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 39 0.12
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 38 0.21
UniRef50_Q26593 Cluster: Protein disulfide isomerase homologue p... 33 6.1
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 136 bits (328), Expect = 8e-31
Identities = 77/156 (49%), Positives = 97/156 (62%), Gaps = 2/156 (1%)
Frame = +1
Query: 259 RQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXS 438
RQKKAHIMEIQLNGGT+ +KV WA+ LEK +PV SVF+Q E+ID I S
Sbjct: 174 RQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTS 233
Query: 439 RWHTKKLPRKTHKGLRKVACIGAC--ILLGCRSL*LVLVRKVIITVLK*TRKSIVLDKEF 612
RWHTKKLPRKTHKGLRKVACIGA +GC +K + +K + +
Sbjct: 234 RWHTKKLPRKTHKGLRKVACIGAWHPARVGCSI--ARAGQKGYHHRTELNKKIFRIGRGP 291
Query: 613 HKKDGKVIKNNAST*VLILSEKFHLHPIGRVSPHYG 720
H +DGK++KNNAST + ++ + P+G PHYG
Sbjct: 292 HMEDGKLVKNNASTSYDVTAKS--ITPLGGF-PHYG 324
Score = 106 bits (255), Expect = 5e-22
Identities = 44/84 (52%), Positives = 59/84 (70%)
Frame = +2
Query: 2 GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 181
GVVGY+ TP GLR+ T++AEH+S++CRRRFYK+W+ W+D G+K ++
Sbjct: 88 GVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKDWHKSKKKAFTKACKRWRDTDGKKQLQ 147
Query: 182 KDFKKMIRYCSVVRVIAHTQMKLL 253
KDF M +YC V+RVI HTQMKLL
Sbjct: 148 KDFAAMKKYCKVIRVIVHTQMKLL 171
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 134 bits (323), Expect = 3e-30
Identities = 77/158 (48%), Positives = 97/158 (61%)
Frame = +1
Query: 259 RQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXS 438
RQKKAH+MEIQ+NGGT+ +K+ WARE LE+ +PV+ VF QDEMID I S
Sbjct: 174 RQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTS 233
Query: 439 RWHTKKLPRKTHKGLRKVACIGACILLGCRSL*LVLVRKVIITVLK*TRKSIVLDKEFHK 618
RWHTKKLPRKTH+GLRKVACIGA +K + +K + + +
Sbjct: 234 RWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLI 293
Query: 619 KDGKVIKNNAST*VLILSEKFHLHPIGRVSPHYGWKVN 732
KDGK+IKNNAST LS+K ++P+G HYG N
Sbjct: 294 KDGKLIKNNAST-DYDLSDK-SINPLGGF-VHYGEVTN 328
Score = 115 bits (277), Expect = 1e-24
Identities = 48/84 (57%), Positives = 61/84 (72%)
Frame = +2
Query: 2 GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 181
G+VGY+ETP GLR TV+AEH+S++C+RRFYKNW+ WQDE G+K +E
Sbjct: 88 GIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDEDGKKQLE 147
Query: 182 KDFKKMIRYCSVVRVIAHTQMKLL 253
KDF M +YC V+RVIAHTQM+LL
Sbjct: 148 KDFSSMKKYCQVIRVIAHTQMRLL 171
Score = 68.9 bits (161), Expect = 1e-10
Identities = 28/33 (84%), Positives = 33/33 (100%)
Frame = +3
Query: 510 HPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQG 608
HP+RV+F+VARAGQKGYHHRTE+NKKIY+IGQG
Sbjct: 258 HPARVAFSVARAGQKGYHHRTEINKKIYKIGQG 290
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 106 bits (254), Expect = 7e-22
Identities = 46/81 (56%), Positives = 55/81 (67%)
Frame = +2
Query: 2 GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 181
GV GY++TP G RAL T+WAEH+SE+ RRRFY NW WQDE G+K IE
Sbjct: 88 GVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIE 147
Query: 182 KDFKKMIRYCSVVRVIAHTQM 244
DF K+ +YCS +RVIAHTQM
Sbjct: 148 ADFAKLKKYCSSIRVIAHTQM 168
Score = 63.7 bits (148), Expect = 5e-09
Identities = 30/47 (63%), Positives = 31/47 (65%)
Frame = +1
Query: 367 VFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKTHKGLRKVACIGA 507
V A +MID I SRWHTKKLPRKTHKGLRKVACIGA
Sbjct: 162 VIAHTQMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGA 208
Score = 62.1 bits (144), Expect = 2e-08
Identities = 26/32 (81%), Positives = 30/32 (93%)
Frame = +3
Query: 510 HPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQ 605
HPSRV+FTVARAGQKG+HHRT +N KIYRIG+
Sbjct: 210 HPSRVAFTVARAGQKGFHHRTIINNKIYRIGK 241
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 88.2 bits (209), Expect = 2e-16
Identities = 42/81 (51%), Positives = 50/81 (61%)
Frame = +1
Query: 265 KKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRW 444
KKAH+ EIQ+NGGTI K++ A+ LEK + +DSVF Q E D RW
Sbjct: 230 KKAHVSEIQINGGTIAQKIELAKSLLEKEVRIDSVFQQSEACDVCAVTKGHGFTGVVKRW 289
Query: 445 HTKKLPRKTHKGLRKVACIGA 507
LPRKTH+GLRKVACIGA
Sbjct: 290 GVACLPRKTHRGLRKVACIGA 310
Score = 66.9 bits (156), Expect = 5e-10
Identities = 31/88 (35%), Positives = 48/88 (54%)
Frame = +2
Query: 2 GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 181
G+VGY +TP G + + TVWA H S + RRRFYKNW + GR +
Sbjct: 139 GIVGYRQTPVGHKTIGTVWAHHTSVEFRRRFYKNWKQSAQLAFTKRKQFARTTEGRLAEA 198
Query: 182 KDFKKMIRYCSVVRVIAHTQMKLLNSDK 265
+ K + ++RV+AHTQ++ L +++
Sbjct: 199 RTLKAFEKKADIIRVVAHTQLRKLRNNR 226
Score = 61.7 bits (143), Expect = 2e-08
Identities = 24/34 (70%), Positives = 30/34 (88%)
Frame = +3
Query: 510 HPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGI 611
HPSRV +TVARAGQ GYHHRT +NKKIY++G+ +
Sbjct: 312 HPSRVMYTVARAGQHGYHHRTHLNKKIYQLGRAV 345
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 74.5 bits (175), Expect = 3e-12
Identities = 35/93 (37%), Positives = 55/93 (59%)
Frame = +2
Query: 2 GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 181
G+VGYIE P GL V+AEH+S ++ FYKNW+ ++G++ +E
Sbjct: 88 GIVGYIEIPRGLWTFKAVFAEHISGKSKKCFYKNWHSEKKASTKYF------DMGKRQLE 141
Query: 182 KDFKKMIRYCSVVRVIAHTQMKLLNSDKRRLTL 280
+FK M +YC V+ ++AHTQM LL+ +++ L
Sbjct: 142 MEFKSMKKYCQVICIVAHTQMCLLSLHQKKAHL 174
Score = 51.2 bits (117), Expect = 3e-05
Identities = 22/33 (66%), Positives = 28/33 (84%)
Frame = +3
Query: 510 HPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQG 608
HP+RV+F+VA+ GQKGYHH + NKKI +IGQG
Sbjct: 237 HPARVTFSVAQVGQKGYHHNGD-NKKICKIGQG 268
>UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 173
Score = 65.7 bits (153), Expect = 1e-09
Identities = 31/78 (39%), Positives = 45/78 (57%)
Frame = -2
Query: 507 SSNAGNFPKXXXXXXXXXXXVPTRSDTFVSFALGDTNAVNHFILGKHRIDRDRFLQMFSG 328
S+N N + P+ DT + GD+N +NHFIL ++R++R+ F ++F G
Sbjct: 21 STNTSNLSQTSVGLSWQFLGTPSVGDTLETVTFGDSNDINHFILFENRVNRNFFFKVFFG 80
Query: 327 PFHFVLDGTTVKLDFHNV 274
P +FV DGTTV LDF V
Sbjct: 81 PVNFVGDGTTVDLDFSQV 98
Score = 37.9 bits (84), Expect = 0.28
Identities = 25/68 (36%), Positives = 32/68 (47%)
Frame = -1
Query: 247 LHLSVGNDSYNTTVADHLLEIFFY*FASKLILPFLTGFSESLLLAFVPVFVEATSTVFRH 68
L L V DS N +V + F F + F F E LL F+PV VE++S F
Sbjct: 108 LDLGVSQDSDNRSVLLDSGQFSFNLFGVSGV--FTRVFGEGFLLGFIPVLVESSSDFFTQ 165
Query: 67 MLRPDSQQ 44
+ PDS Q
Sbjct: 166 VFSPDSGQ 173
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 64.9 bits (151), Expect = 2e-09
Identities = 43/131 (32%), Positives = 65/131 (49%)
Frame = +1
Query: 262 QKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSR 441
QKKAH+ E Q+N G + K+ WA + LE+ +PV+ +F + I S
Sbjct: 132 QKKAHLTESQVNRGPVA-KLDWAHKKLEQQVPVNHIFRVRRLF-VIGTTKGKHYKGISSH 189
Query: 442 WHTKKLPRKTHKGLRKVACIGACILLGCRSL*LVLVRKVIITVLK*TRKSIVLDKEFHKK 621
W+TKK+P KTH+ + ACI L + R+ +K + + + K
Sbjct: 190 WYTKKVPWKTHQEFHEAACIWD-------GLSVAWARQKGCHHCTINKKIYKIGQGYLIK 242
Query: 622 DGKVIKNNAST 654
+GK+IKNNAST
Sbjct: 243 NGKIIKNNAST 253
Score = 36.3 bits (80), Expect = 0.86
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = +3
Query: 531 TVARAGQKGYHHRTEMNKKIYRIGQG 608
+VA A QKG HH T +NKKIY+IGQG
Sbjct: 214 SVAWARQKGCHHCT-INKKIYKIGQG 238
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 64.1 bits (149), Expect = 4e-09
Identities = 31/80 (38%), Positives = 48/80 (60%)
Frame = +1
Query: 265 KKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRW 444
KK + E + GG+ + K+++ + K I ++S+F ++++ID I SRW
Sbjct: 158 KKKYFFETDIIGGSPKMKLEFWLKLNNKKIYINSIFHENDIIDAIGITKGHGTKGVVSRW 217
Query: 445 HTKKLPRKTHKGLRKVACIG 504
+LPRKTH+GLRKVACIG
Sbjct: 218 GITRLPRKTHRGLRKVACIG 237
Score = 53.2 bits (122), Expect = 7e-06
Identities = 22/30 (73%), Positives = 27/30 (90%)
Frame = +3
Query: 513 PSRVSFTVARAGQKGYHHRTEMNKKIYRIG 602
PSRV++T++RAGQKGYH RT NKKIY+IG
Sbjct: 241 PSRVAWTISRAGQKGYHKRTLFNKKIYKIG 270
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 50.8 bits (116), Expect = 4e-05
Identities = 26/81 (32%), Positives = 38/81 (46%)
Frame = +1
Query: 262 QKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSR 441
+KK +ME + G ++E+K + +E L K + V V + E++D I R
Sbjct: 177 KKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKR 236
Query: 442 WHTKKLPRKTHKGLRKVACIG 504
W K K KG RKV IG
Sbjct: 237 WGIKLRAHKDSKGRRKVGSIG 257
Score = 49.6 bits (113), Expect = 9e-05
Identities = 19/32 (59%), Positives = 26/32 (81%)
Frame = +3
Query: 510 HPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQ 605
HP+RV +TV AGQ G+HHRTE+NK++ IG+
Sbjct: 260 HPARVMWTVPMAGQMGFHHRTELNKRLIAIGE 291
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 48.4 bits (110), Expect = 2e-04
Identities = 26/89 (29%), Positives = 39/89 (43%)
Frame = +1
Query: 238 SNEAVKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXX 417
S A QKK +I E ++GG I + +E L K I +D +F +D
Sbjct: 147 SPSAAGLEQKKPYIFEASVSGGDIPKQFAHVKELLGKEIKIDQIFETGASVDVAAITKGK 206
Query: 418 XXXXXXSRWHTKKLPRKTHKGLRKVACIG 504
RW+ KK K+ K +R+V +G
Sbjct: 207 GWQGVLKRWNVKKKQHKSRKTVREVGSLG 235
Score = 35.9 bits (79), Expect = 1.1
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 507 LHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 602
+ P V +TV RAGQ G+H R E +K+I +G
Sbjct: 237 ISPQSVMYTVPRAGQFGFHQRVEYDKRIMIMG 268
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 47.2 bits (107), Expect = 5e-04
Identities = 22/82 (26%), Positives = 40/82 (48%)
Frame = +1
Query: 262 QKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSR 441
+K I +I + G + K+++A L K + ++ VF + + +D I R
Sbjct: 147 KKTPEIFDIPIGGSDVNKKLEYALSLLGKELSINDVFKEGQYVDVIAVTKGKGFQGVIKR 206
Query: 442 WHTKKLPRKTHKGLRKVACIGA 507
+H + K+ KG+RKV IG+
Sbjct: 207 FHVHRRQHKSEKGVRKVGAIGS 228
Score = 41.9 bits (94), Expect = 0.017
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +3
Query: 513 PSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGI-PQKGWQSY 635
P R+ TV GQ GYH RTE NK I +IG+ + + GW Y
Sbjct: 231 PGRIFPTVPMPGQMGYHRRTEYNKLIIKIGEPLNVEGGWVRY 272
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 46.0 bits (104), Expect = 0.001
Identities = 20/31 (64%), Positives = 24/31 (77%)
Frame = +3
Query: 513 PSRVSFTVARAGQKGYHHRTEMNKKIYRIGQ 605
PSRV +TV AGQ GYH RTE NK+I +IG+
Sbjct: 246 PSRVRWTVPMAGQVGYHQRTEHNKRILKIGE 276
Score = 35.1 bits (77), Expect = 2.0
Identities = 18/72 (25%), Positives = 32/72 (44%)
Frame = +1
Query: 262 QKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSR 441
+KK +ME ++ G + ++ ++A E L + I VF + E++D R
Sbjct: 160 KKKPDVMEYRIGGKDVRERFEYAVEILSEEIRAKDVFDEGEIVDVSAITKGKGFQGVVKR 219
Query: 442 WHTKKLPRKTHK 477
W RKT +
Sbjct: 220 WGVTIQDRKTQR 231
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 44.0 bits (99), Expect = 0.004
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Frame = +3
Query: 510 HPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQG---IPQKGWQSY 635
+PSRV TV + GQ GYH RTE+NK++ I G P G+ +Y
Sbjct: 241 NPSRVRSTVPQQGQTGYHQRTELNKRLIDINDGDEPTPDGGFPNY 285
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 41.1 bits (92), Expect = 0.030
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = +1
Query: 262 QKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSR 441
+K ++EIQ+ GG + ++ +A L K I + VF + ++ID + R
Sbjct: 173 KKAPDLVEIQIGGGEKKSQLDYALNILGKEITIRDVFKEGQLIDVVGVTKGKGFAGVIKR 232
Query: 442 WHTKKLPR--KTHKGLRKVACIG 504
+ +LPR K KG RK+ G
Sbjct: 233 YSVVELPRWHKHRKGSRKIGTRG 255
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 40.3 bits (90), Expect = 0.053
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +3
Query: 507 LHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 602
+ P V +TV RAGQ G+H R E NK+I +G
Sbjct: 235 ISPQNVMYTVPRAGQMGFHQRIEYNKRIMAVG 266
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 39.9 bits (89), Expect = 0.070
Identities = 23/80 (28%), Positives = 35/80 (43%)
Frame = +1
Query: 265 KKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRW 444
K IME+ L GG + ++ WA E L + + ++ VF ID I R+
Sbjct: 160 KSPEIMEMGLTGGDLGAQLDWAAEKLGEELGIEDVFESGSDIDVIGVTKGYGNQGVVRRF 219
Query: 445 HTKKLPRKTHKGLRKVACIG 504
K L K K R++ +G
Sbjct: 220 GVKLLSHKNSKRRRQIGNMG 239
Score = 37.1 bits (82), Expect = 0.50
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +3
Query: 531 TVARAGQKGYHHRTEMNKKIYRI 599
T+ +AGQ GYH RTE NK+I RI
Sbjct: 249 TIRQAGQTGYHQRTEYNKRILRI 271
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 39.9 bits (89), Expect = 0.070
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Frame = +1
Query: 262 QKKAHIMEIQLNGGTIEDKV-KWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXS 438
+KK ++EI++ G + K+ +A++ L I V+ VF + +++D I
Sbjct: 160 KKKPDLLEIKVGGVSDVTKLFDYAKDVLGNLIAVNDVFEEGQLVDVIAVTKGKGFQGVIK 219
Query: 439 RWHTKKLPR--KTHKGLRKV 492
RW K+LPR K KG R++
Sbjct: 220 RWGVKELPRWHKHRKGSRRI 239
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 39.5 bits (88), Expect = 0.093
Identities = 22/76 (28%), Positives = 34/76 (44%)
Frame = +1
Query: 277 IMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKK 456
IME+ L GG K++WA E L I +D V+ + +D + R+ K
Sbjct: 184 IMEVGLVGGDTGAKLEWAHERLGGEIGIDDVYEAGKELDVVGITKGKGWQGVIKRFGVKL 243
Query: 457 LPRKTHKGLRKVACIG 504
L K K R++ +G
Sbjct: 244 LSHKNSKRRRQIGNMG 259
Score = 37.9 bits (84), Expect = 0.28
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +3
Query: 531 TVARAGQKGYHHRTEMNKKIYRI 599
T+ +AGQ GYH RTE+NK+I RI
Sbjct: 269 TIRQAGQMGYHKRTELNKRILRI 291
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 39.1 bits (87), Expect = 0.12
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +3
Query: 510 HPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 602
+P R+ + V + GQ GYH RTE NK+I ++G
Sbjct: 242 NPHRIRWQVPQLGQTGYHQRTEYNKRILKMG 272
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 38.3 bits (85), Expect = 0.21
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = +3
Query: 513 PSRVSFTVARAGQKGYHHRTEMNKKIYRIG 602
P V ++V GQ GYH RTE NK+I +IG
Sbjct: 240 PKMVMWSVPMPGQMGYHQRTEYNKRILKIG 269
>UniRef50_Q26593 Cluster: Protein disulfide isomerase homologue
precursor; n=2; Schistosoma|Rep: Protein disulfide
isomerase homologue precursor - Schistosoma mansoni
(Blood fluke)
Length = 482
Score = 33.5 bits (73), Expect = 6.1
Identities = 17/59 (28%), Positives = 33/59 (55%)
Frame = +1
Query: 217 CKSHCPHSNEAVKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMID 393
CK+ P +EA K+ ++K ++++ T+E+++ A +H EK P F ++ ID
Sbjct: 55 CKALAPEYSEAAKKLKEKGSLIKLAKVDATVEEEL--ALKHGEKGYPTLKFFRNEQPID 111
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 848,454,610
Number of Sequences: 1657284
Number of extensions: 17476861
Number of successful extensions: 42374
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 40827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42350
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66262109095
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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