Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30531
(784 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 113 3e-26
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 113 3e-26
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar... 27 2.3
SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces... 27 4.0
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 26 5.3
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 9.3
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac... 25 9.3
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 113 bits (272), Expect = 3e-26
Identities = 50/82 (60%), Positives = 61/82 (74%)
Frame = +1
Query: 262 QKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSR 441
QKKAH+MEIQ+NGG++ DKV+WAREH EK + + S F Q+EMID I +R
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTAR 232
Query: 442 WHTKKLPRKTHKGLRKVACIGA 507
W TK+LPRKTH+GLRKVACIGA
Sbjct: 233 WGTKRLPRKTHRGLRKVACIGA 254
Score = 93.1 bits (221), Expect = 4e-20
Identities = 40/82 (48%), Positives = 58/82 (70%)
Frame = +2
Query: 2 GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 181
GVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+ + + +SI
Sbjct: 88 GVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYAKKYAE--STQSIN 145
Query: 182 KDFKKMIRYCSVVRVIAHTQMK 247
++ +++ +YCSVVRV+AHTQ++
Sbjct: 146 RELERIKKYCSVVRVLAHTQIR 167
Score = 53.6 bits (123), Expect = 3e-08
Identities = 22/33 (66%), Positives = 26/33 (78%)
Frame = +3
Query: 510 HPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQG 608
HP+ V +TVARAG GY HRT++N KIYRIG G
Sbjct: 256 HPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG 288
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 113 bits (272), Expect = 3e-26
Identities = 50/82 (60%), Positives = 61/82 (74%)
Frame = +1
Query: 262 QKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSR 441
QKKAH+MEIQ+NGG++ DKV+WAREH EK + + S F Q+EMID I +R
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTAR 232
Query: 442 WHTKKLPRKTHKGLRKVACIGA 507
W TK+LPRKTH+GLRKVACIGA
Sbjct: 233 WGTKRLPRKTHRGLRKVACIGA 254
Score = 93.1 bits (221), Expect = 4e-20
Identities = 40/82 (48%), Positives = 58/82 (70%)
Frame = +2
Query: 2 GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 181
GVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+ + + +SI
Sbjct: 88 GVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYAKKYAE--STQSIN 145
Query: 182 KDFKKMIRYCSVVRVIAHTQMK 247
++ +++ +YCSVVRV+AHTQ++
Sbjct: 146 RELERIKKYCSVVRVLAHTQIR 167
Score = 53.6 bits (123), Expect = 3e-08
Identities = 22/33 (66%), Positives = 26/33 (78%)
Frame = +3
Query: 510 HPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQG 608
HP+ V +TVARAG GY HRT++N KIYRIG G
Sbjct: 256 HPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG 288
>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 654 LSIDSV*EIPFTPDWEGFPPLWVES*PTGFLW 749
+S ++ +IPF DW P W + P GF W
Sbjct: 141 MSYNAYQKIPFDGDWLDLGPDWNITPPEGFGW 172
>SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 282
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +1
Query: 238 SNEAVKQRQKKA--HIMEIQLNGGTIEDKVKWAREHLEKPI 354
S E +KQ+ A +I +I++NGG + ++ + HL K +
Sbjct: 92 SKEDLKQKYPDAAEYISKIEINGGKVMHEIDATKLHLHKKL 132
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 26.2 bits (55), Expect = 5.3
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +3
Query: 15 TLRPLMDYALC*LSGRSICLKTVDVASTKTGTNARRRLSLKPVRNGRMSLD 167
TL DYA+ S +S+ LK V+ T T RRR + RN + L+
Sbjct: 219 TLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTKKRRRTANTSQRNDGLDLN 269
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 25.4 bits (53), Expect = 9.3
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 172 FASKLILPFLTGFSESLLLAFVPVFVEATST 80
F SKL L + F E + LAF+ F+E TS+
Sbjct: 1032 FFSKLTLQQVQEFYEVVPLAFINCFLEFTSS 1062
>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 25.4 bits (53), Expect = 9.3
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 280 MEIQLNGGTIEDKVKWAREH 339
M +Q G TI KW REH
Sbjct: 46 MPVQYKGQTISASHKWTREH 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,517,827
Number of Sequences: 5004
Number of extensions: 74666
Number of successful extensions: 198
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -