Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30531
(784 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 105 3e-23
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 105 3e-23
11_01_0710 - 5830475-5830595,5831498-5834124 32 0.59
04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748... 29 3.2
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847... 29 3.2
11_08_0021 + 27716298-27716478,27717137-27717309,27717408-277175... 29 4.2
05_02_0127 - 6872780-6872835,6872943-6873026,6873501-6873784,687... 28 7.3
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 28 7.3
01_01_0084 - 636835-637965 28 7.3
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 105 bits (253), Expect = 3e-23
Identities = 49/83 (59%), Positives = 59/83 (71%)
Frame = +1
Query: 259 RQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXS 438
+QKKAH+MEIQ+NGGTI DKV + + EK IPVD+VF +DEMID I +
Sbjct: 175 KQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVT 234
Query: 439 RWHTKKLPRKTHKGLRKVACIGA 507
RW +LPRKTH+GLRKVACIGA
Sbjct: 235 RWGVTRLPRKTHRGLRKVACIGA 257
Score = 92.3 bits (219), Expect = 4e-19
Identities = 39/90 (43%), Positives = 59/90 (65%)
Frame = +2
Query: 2 GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 181
G+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW + + G+K I+
Sbjct: 88 GLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQ 147
Query: 182 KDFKKMIRYCSVVRVIAHTQMKLLNSDKRR 271
+KM +Y S+VRVIAHTQ++ + K++
Sbjct: 148 MQLEKMKKYASIVRVIAHTQIRKMKGLKQK 177
Score = 65.7 bits (153), Expect = 4e-11
Identities = 26/32 (81%), Positives = 31/32 (96%)
Frame = +3
Query: 510 HPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQ 605
HP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG+
Sbjct: 259 HPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 290
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 105 bits (253), Expect = 3e-23
Identities = 49/83 (59%), Positives = 59/83 (71%)
Frame = +1
Query: 259 RQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXS 438
+QKKAH+MEIQ+NGGTI DKV + + EK IPVD+VF +DEMID I +
Sbjct: 175 KQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVT 234
Query: 439 RWHTKKLPRKTHKGLRKVACIGA 507
RW +LPRKTH+GLRKVACIGA
Sbjct: 235 RWGVTRLPRKTHRGLRKVACIGA 257
Score = 91.1 bits (216), Expect = 9e-19
Identities = 39/90 (43%), Positives = 58/90 (64%)
Frame = +2
Query: 2 GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 181
G+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW + + G+K I+
Sbjct: 88 GLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQ 147
Query: 182 KDFKKMIRYCSVVRVIAHTQMKLLNSDKRR 271
+KM +Y SVVRVI HTQ++ + K++
Sbjct: 148 MQLEKMKKYASVVRVIVHTQIRKMKGLKQK 177
Score = 65.7 bits (153), Expect = 4e-11
Identities = 26/32 (81%), Positives = 31/32 (96%)
Frame = +3
Query: 510 HPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQ 605
HP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG+
Sbjct: 259 HPARVSYTVARAGQNGYHHRTEMNKKVYKIGK 290
>11_01_0710 - 5830475-5830595,5831498-5834124
Length = 915
Score = 31.9 bits (69), Expect = 0.59
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 395 QSIISSWANTESTGIGFSRCSLAHFTLSSMVPPLSWISIM 276
+S+ISSW + TG S CS+ + + PLS S++
Sbjct: 650 ESVISSWGGSVHTGTSSSSCSVTNLVVKFCTLPLSQWSLL 689
>04_04_1477 +
33873976-33874080,33874433-33874544,33874777-33874874,
33875548-33876261,33876348-33876518,33876955-33877011,
33877096-33878718
Length = 959
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +1
Query: 274 HIMEIQLNGGTIEDKVKWAREHLEKPIPVDS 366
H++E + N ++++K+K +H E +P+DS
Sbjct: 460 HLLEDRENNESVDEKIKGDAQHEENTLPLDS 490
>01_06_0083 +
26283492-26283756,26284255-26284467,26284620-26284771,
26284884-26285157,26285277-26285485
Length = 370
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 175 NRKRFQEDDPLL*CCKSHCPHSNEAVKQR 261
N +RF +DPLL CC H P+ A R
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGATCDR 325
>11_08_0021 +
27716298-27716478,27717137-27717309,27717408-27717578,
27717967-27718077,27718168-27718245,27718642-27718832,
27718873-27718958,27719202-27719206,27719301-27719378,
27719465-27719527,27719597-27719680,27720049-27720209,
27720377-27720416,27720774-27720893,27720993-27721211,
27721927-27722100,27722202-27722883,27722986-27723185,
27723269-27723407,27723502-27723677
Length = 1043
Score = 29.1 bits (62), Expect = 4.2
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +2
Query: 149 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLNSDKRRLTLWKSNLTVVPSRTK--* 322
W ++IE R CS + + HT L ++ R+TL S SR K
Sbjct: 748 WVSSFITRAIEAYPSATWRACSCMHTLLHTPNFSLGAEDTRMTLAVSFAQAAFSRFKSVS 807
Query: 323 NGPENIWRNLSLSI 364
+ P IW+ L L I
Sbjct: 808 DSPSGIWKPLILVI 821
>05_02_0127 -
6872780-6872835,6872943-6873026,6873501-6873784,
6874403-6874568,6876724-6876906,6877400-6877505,
6877620-6877775,6878882-6878899
Length = 350
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 675 EIPFTPDWEGFPPLWVES*PTGFLWIDSKGLPA 773
++P TP G P+ V + P G+ + G+PA
Sbjct: 140 QVPLTPTQNGIRPMPVNNLPMGYPVLQQPGIPA 172
>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 256 QRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMI 390
Q K+ ++E +++ ++ D+V L KP PV F DE++
Sbjct: 2667 QHGKRIAVIENEVHDFSMPDRVNAINPGLAKPGPVIETFCSDELV 2711
>01_01_0084 - 636835-637965
Length = 376
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -3
Query: 638 LITLPSFLWNSLSNTIDFLVHFSTVMITFLTSTSYS 531
L T SFL SLS+T L F +++ +FLT+ S S
Sbjct: 58 LATAASFLSTSLSSTSVSLPRFRSLLASFLTTLSNS 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,398,562
Number of Sequences: 37544
Number of extensions: 498270
Number of successful extensions: 1126
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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