Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30531
         (784 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)               126   3e-29
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)         109   2e-24
SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)               47   1e-05
SB_30477| Best HMM Match : Metallothionein (HMM E-Value=8.3)           29   4.2  
SB_11005| Best HMM Match : SspH (HMM E-Value=0.85)                     28   9.8  
SB_12803| Best HMM Match : Lig_chan (HMM E-Value=0)                    28   9.8  

>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
          Length = 338

 Score =  126 bits (303), Expect = 3e-29
 Identities = 71/143 (49%), Positives = 82/143 (57%), Gaps = 1/143 (0%)
 Frame = +1

Query: 229 CPHSNEAVKQRQKKAHIMEIQLNGGT-IEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXX 405
           C    + +K RQKKAHIMEIQ+NGG  + +KV W RE LE P PV  VF+ DEMID I  
Sbjct: 163 CHTQQKLLKMRQKKAHIMEIQVNGGKDVAEKVDWCRERLENPAPVRKVFSPDEMIDVIGV 222

Query: 406 XXXXXXXXXXSRWHTKKLPRKTHKGLRKVACIGACILLGCRSL*LVLVRKVIITVLK*TR 585
                      RW TKKLPRKTHKGLRKVACIGA              +       +  +
Sbjct: 223 TKGHGFKGVTYRWGTKKLPRKTHKGLRKVACIGAWHPARVSFSVARAGQAGYHHRTELNK 282

Query: 586 KSIVLDKEFHKKDGKVIKNNAST 654
           K   + +  HKKDGKVIKNNAST
Sbjct: 283 KIYRIGQGIHKKDGKVIKNNAST 305



 Score =  116 bits (278), Expect = 3e-26
 Identities = 49/90 (54%), Positives = 62/90 (68%)
 Frame = +2

Query: 2   GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 181
           GVVGYIETP G+R L T+WAEH+SE+C+RRFYKNW              W D+ G+KSIE
Sbjct: 87  GVVGYIETPRGMRVLKTIWAEHLSEECKRRFYKNWCNSKKKAFTKASKRWADDDGKKSIE 146

Query: 182 KDFKKMIRYCSVVRVIAHTQMKLLNSDKRR 271
           +DF  M +YC V+RVI HTQ KLL   +++
Sbjct: 147 EDFNTMKKYCKVIRVICHTQQKLLKMRQKK 176



 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 31/37 (83%), Positives = 35/37 (94%)
 Frame = +3

Query: 510 HPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIPQK 620
           HP+RVSF+VARAGQ GYHHRTE+NKKIYRIGQGI +K
Sbjct: 258 HPARVSFSVARAGQAGYHHRTELNKKIYRIGQGIHKK 294


>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
          Length = 347

 Score =  109 bits (263), Expect = 2e-24
 Identities = 46/80 (57%), Positives = 56/80 (70%)
 Frame = +2

Query: 2   GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 181
           GVVGYIETP G+R L T+WAEH+SE+C+RRFYKNW              W D+ G+KSIE
Sbjct: 135 GVVGYIETPRGMRVLKTIWAEHLSEECKRRFYKNWCNSKKKAFTKASKRWADDDGKKSIE 194

Query: 182 KDFKKMIRYCSVVRVIAHTQ 241
           +DF  M +YC V+RVI HTQ
Sbjct: 195 EDFNTMKKYCKVIRVICHTQ 214


>SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 19/22 (86%), Positives = 21/22 (95%)
 Frame = +3

Query: 555 GYHHRTEMNKKIYRIGQGIPQK 620
           GYHHRTE+NKKIYRIGQGI +K
Sbjct: 2   GYHHRTELNKKIYRIGQGIHKK 23



 Score = 33.9 bits (74), Expect = 0.15
 Identities = 15/24 (62%), Positives = 18/24 (75%)
 Frame = +1

Query: 583 RKSIVLDKEFHKKDGKVIKNNAST 654
           +K   + +  HKKDGKVIKNNAST
Sbjct: 11  KKIYRIGQGIHKKDGKVIKNNAST 34


>SB_30477| Best HMM Match : Metallothionein (HMM E-Value=8.3)
          Length = 178

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +2

Query: 623 MAKLLKTMHLLEY*FCLRNSIYTRL-GGFPPIMGGKL 730
           M ++   M+ +EY  CL NSI+T L  G PP++  KL
Sbjct: 120 MCQVEYCMYQVEYCMCLENSIHTPLPTGNPPLLQLKL 156


>SB_11005| Best HMM Match : SspH (HMM E-Value=0.85)
          Length = 105

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 253 KQRQKKAHIMEIQLNGGTIEDKVKWAREHLEK 348
           KQ+  K  + E++ N   +EDKV+W +   EK
Sbjct: 53  KQKLAKNLLREMERNETDVEDKVEWTKAITEK 84


>SB_12803| Best HMM Match : Lig_chan (HMM E-Value=0)
          Length = 1001

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = -3

Query: 764 TLGINPQKARWLTFHP*WGETLPIGCKWNFSDRINTQVDALFLITLPSFLWNSLSNTIDF 585
           TL I   ++R + F   +GE + IG        + + V+  F+I L S LW  +  TI F
Sbjct: 383 TLTITASRSRVIDFSSPYGE-VGIGILARTDTTLGSVVNMDFMIPLSSQLWTVILATILF 441

Query: 584 LV 579
           ++
Sbjct: 442 VI 443


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,595,040
Number of Sequences: 59808
Number of extensions: 573056
Number of successful extensions: 1312
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1309
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)