Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30531
(784 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal prote... 133 1e-31
Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal prote... 133 1e-31
Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical p... 133 1e-31
Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical p... 133 1e-31
Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical pr... 133 1e-31
Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical pr... 133 1e-31
Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical p... 106 2e-23
Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical pr... 106 2e-23
AF003146-5|AAB54199.1| 299|Caenorhabditis elegans Hypothetical ... 29 2.8
Z93383-7|CAB07621.1| 285|Caenorhabditis elegans Hypothetical pr... 29 5.0
>Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 133 bits (322), Expect = 1e-31
Identities = 61/86 (70%), Positives = 69/86 (80%)
Frame = +1
Query: 250 VKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXX 429
+++RQKKAH++EIQ+NGGTIE KV WAREHLEK + VD+VFAQDEMID I
Sbjct: 171 LRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKG 230
Query: 430 XXSRWHTKKLPRKTHKGLRKVACIGA 507
SRWHTKKLPRKTHKGLRKVACIGA
Sbjct: 231 VTSRWHTKKLPRKTHKGLRKVACIGA 256
Score = 111 bits (268), Expect = 4e-25
Identities = 49/93 (52%), Positives = 62/93 (66%)
Frame = +2
Query: 2 GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 181
GV GY++TP G RAL T+WAEH+SE+ RRRFY NW WQDE G+K IE
Sbjct: 88 GVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIE 147
Query: 182 KDFKKMIRYCSVVRVIAHTQMKLLNSDKRRLTL 280
DF K+ +YCS +RVIAHTQMK+L +++ L
Sbjct: 148 ADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHL 180
Score = 62.1 bits (144), Expect = 4e-10
Identities = 26/32 (81%), Positives = 30/32 (93%)
Frame = +3
Query: 510 HPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQ 605
HPSRV+FTVARAGQKG+HHRT +N KIYRIG+
Sbjct: 258 HPSRVAFTVARAGQKGFHHRTIINNKIYRIGK 289
>Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 133 bits (322), Expect = 1e-31
Identities = 61/86 (70%), Positives = 69/86 (80%)
Frame = +1
Query: 250 VKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXX 429
+++RQKKAH++EIQ+NGGTIE KV WAREHLEK + VD+VFAQDEMID I
Sbjct: 171 LRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKG 230
Query: 430 XXSRWHTKKLPRKTHKGLRKVACIGA 507
SRWHTKKLPRKTHKGLRKVACIGA
Sbjct: 231 VTSRWHTKKLPRKTHKGLRKVACIGA 256
Score = 111 bits (268), Expect = 4e-25
Identities = 49/93 (52%), Positives = 62/93 (66%)
Frame = +2
Query: 2 GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 181
GV GY++TP G RAL T+WAEH+SE+ RRRFY NW WQDE G+K IE
Sbjct: 88 GVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIE 147
Query: 182 KDFKKMIRYCSVVRVIAHTQMKLLNSDKRRLTL 280
DF K+ +YCS +RVIAHTQMK+L +++ L
Sbjct: 148 ADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHL 180
Score = 62.1 bits (144), Expect = 4e-10
Identities = 26/32 (81%), Positives = 30/32 (93%)
Frame = +3
Query: 510 HPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQ 605
HPSRV+FTVARAGQKG+HHRT +N KIYRIG+
Sbjct: 258 HPSRVAFTVARAGQKGFHHRTIINNKIYRIGK 289
>Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 133 bits (322), Expect = 1e-31
Identities = 61/86 (70%), Positives = 69/86 (80%)
Frame = +1
Query: 250 VKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXX 429
+++RQKKAH++EIQ+NGGTIE KV WAREHLEK + VD+VFAQDEMID I
Sbjct: 73 LRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKG 132
Query: 430 XXSRWHTKKLPRKTHKGLRKVACIGA 507
SRWHTKKLPRKTHKGLRKVACIGA
Sbjct: 133 VTSRWHTKKLPRKTHKGLRKVACIGA 158
Score = 62.1 bits (144), Expect = 4e-10
Identities = 26/32 (81%), Positives = 30/32 (93%)
Frame = +3
Query: 510 HPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQ 605
HPSRV+FTVARAGQKG+HHRT +N KIYRIG+
Sbjct: 160 HPSRVAFTVARAGQKGFHHRTIINNKIYRIGK 191
Score = 58.0 bits (134), Expect = 7e-09
Identities = 25/44 (56%), Positives = 33/44 (75%)
Frame = +2
Query: 149 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLNSDKRRLTL 280
WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L +++ L
Sbjct: 39 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHL 82
>Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 133 bits (322), Expect = 1e-31
Identities = 61/86 (70%), Positives = 69/86 (80%)
Frame = +1
Query: 250 VKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXX 429
+++RQKKAH++EIQ+NGGTIE KV WAREHLEK + VD+VFAQDEMID I
Sbjct: 171 LRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKG 230
Query: 430 XXSRWHTKKLPRKTHKGLRKVACIGA 507
SRWHTKKLPRKTHKGLRKVACIGA
Sbjct: 231 VTSRWHTKKLPRKTHKGLRKVACIGA 256
Score = 111 bits (268), Expect = 4e-25
Identities = 49/93 (52%), Positives = 62/93 (66%)
Frame = +2
Query: 2 GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 181
GV GY++TP G RAL T+WAEH+SE+ RRRFY NW WQDE G+K IE
Sbjct: 88 GVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIE 147
Query: 182 KDFKKMIRYCSVVRVIAHTQMKLLNSDKRRLTL 280
DF K+ +YCS +RVIAHTQMK+L +++ L
Sbjct: 148 ADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHL 180
Score = 62.1 bits (144), Expect = 4e-10
Identities = 26/32 (81%), Positives = 30/32 (93%)
Frame = +3
Query: 510 HPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQ 605
HPSRV+FTVARAGQKG+HHRT +N KIYRIG+
Sbjct: 258 HPSRVAFTVARAGQKGFHHRTIINNKIYRIGK 289
>Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 133 bits (322), Expect = 1e-31
Identities = 61/86 (70%), Positives = 69/86 (80%)
Frame = +1
Query: 250 VKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXX 429
+++RQKKAH++EIQ+NGGTIE KV WAREHLEK + VD+VFAQDEMID I
Sbjct: 73 LRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKG 132
Query: 430 XXSRWHTKKLPRKTHKGLRKVACIGA 507
SRWHTKKLPRKTHKGLRKVACIGA
Sbjct: 133 VTSRWHTKKLPRKTHKGLRKVACIGA 158
Score = 62.1 bits (144), Expect = 4e-10
Identities = 26/32 (81%), Positives = 30/32 (93%)
Frame = +3
Query: 510 HPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQ 605
HPSRV+FTVARAGQKG+HHRT +N KIYRIG+
Sbjct: 160 HPSRVAFTVARAGQKGFHHRTIINNKIYRIGK 191
Score = 58.0 bits (134), Expect = 7e-09
Identities = 25/44 (56%), Positives = 33/44 (75%)
Frame = +2
Query: 149 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLNSDKRRLTL 280
WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L +++ L
Sbjct: 39 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHL 82
>Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 133 bits (322), Expect = 1e-31
Identities = 61/86 (70%), Positives = 69/86 (80%)
Frame = +1
Query: 250 VKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXX 429
+++RQKKAH++EIQ+NGGTIE KV WAREHLEK + VD+VFAQDEMID I
Sbjct: 171 LRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKG 230
Query: 430 XXSRWHTKKLPRKTHKGLRKVACIGA 507
SRWHTKKLPRKTHKGLRKVACIGA
Sbjct: 231 VTSRWHTKKLPRKTHKGLRKVACIGA 256
Score = 111 bits (268), Expect = 4e-25
Identities = 49/93 (52%), Positives = 62/93 (66%)
Frame = +2
Query: 2 GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 181
GV GY++TP G RAL T+WAEH+SE+ RRRFY NW WQDE G+K IE
Sbjct: 88 GVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIE 147
Query: 182 KDFKKMIRYCSVVRVIAHTQMKLLNSDKRRLTL 280
DF K+ +YCS +RVIAHTQMK+L +++ L
Sbjct: 148 ADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHL 180
Score = 62.1 bits (144), Expect = 4e-10
Identities = 26/32 (81%), Positives = 30/32 (93%)
Frame = +3
Query: 510 HPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQ 605
HPSRV+FTVARAGQKG+HHRT +N KIYRIG+
Sbjct: 258 HPSRVAFTVARAGQKGFHHRTIINNKIYRIGK 289
>Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 106 bits (254), Expect = 2e-23
Identities = 46/81 (56%), Positives = 55/81 (67%)
Frame = +2
Query: 2 GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 181
GV GY++TP G RAL T+WAEH+SE+ RRRFY NW WQDE G+K IE
Sbjct: 88 GVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIE 147
Query: 182 KDFKKMIRYCSVVRVIAHTQM 244
DF K+ +YCS +RVIAHTQM
Sbjct: 148 ADFAKLKKYCSSIRVIAHTQM 168
Score = 63.7 bits (148), Expect = 1e-10
Identities = 30/47 (63%), Positives = 31/47 (65%)
Frame = +1
Query: 367 VFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKTHKGLRKVACIGA 507
V A +MID I SRWHTKKLPRKTHKGLRKVACIGA
Sbjct: 162 VIAHTQMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGA 208
Score = 62.1 bits (144), Expect = 4e-10
Identities = 26/32 (81%), Positives = 30/32 (93%)
Frame = +3
Query: 510 HPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQ 605
HPSRV+FTVARAGQKG+HHRT +N KIYRIG+
Sbjct: 210 HPSRVAFTVARAGQKGFHHRTIINNKIYRIGK 241
>Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 106 bits (254), Expect = 2e-23
Identities = 46/81 (56%), Positives = 55/81 (67%)
Frame = +2
Query: 2 GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 181
GV GY++TP G RAL T+WAEH+SE+ RRRFY NW WQDE G+K IE
Sbjct: 88 GVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIE 147
Query: 182 KDFKKMIRYCSVVRVIAHTQM 244
DF K+ +YCS +RVIAHTQM
Sbjct: 148 ADFAKLKKYCSSIRVIAHTQM 168
Score = 63.7 bits (148), Expect = 1e-10
Identities = 30/47 (63%), Positives = 31/47 (65%)
Frame = +1
Query: 367 VFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKTHKGLRKVACIGA 507
V A +MID I SRWHTKKLPRKTHKGLRKVACIGA
Sbjct: 162 VIAHTQMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGA 208
Score = 62.1 bits (144), Expect = 4e-10
Identities = 26/32 (81%), Positives = 30/32 (93%)
Frame = +3
Query: 510 HPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQ 605
HPSRV+FTVARAGQKG+HHRT +N KIYRIG+
Sbjct: 210 HPSRVAFTVARAGQKGFHHRTIINNKIYRIGK 241
>AF003146-5|AAB54199.1| 299|Caenorhabditis elegans Hypothetical
protein F56F4.2 protein.
Length = 299
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 5 VVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWY 109
+ GY++ G+R VW E S+ + KNW+
Sbjct: 209 IAGYVDQSSGVRGRFWVWHECFSQKYHKDPCKNWF 243
>Z93383-7|CAB07621.1| 285|Caenorhabditis elegans Hypothetical
protein F54B8.8 protein.
Length = 285
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -3
Query: 677 FSDRINTQV---DALFLITLPSFLWNSLSNTIDFLVHFSTVMITFLTSTSYSERH 522
FS +I+ +V + +FL+ P L ++ +T+ FLV V+ +F Y+ RH
Sbjct: 71 FSRQISEKVVIKNLIFLLIWPILLVGTVRSTLTFLVTMDRVIGSFFPIFYYNHRH 125
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,623,787
Number of Sequences: 27780
Number of extensions: 429475
Number of successful extensions: 1151
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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