Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30531
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.4  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    23   4.2  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    23   4.2  
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    23   4.2  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    23   4.2  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    23   4.2  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    23   4.2  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    23   4.2  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    23   4.2  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    23   4.2  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    23   4.2  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    23   4.2  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    23   4.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   7.4  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   9.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 7   CWIH*DPSWTTRSVDCLG 60
           C  + D +W T +VDC G
Sbjct: 765 CKCYNDRTWNTNAVDCSG 782


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 507 LHPSRVSFTVARAGQKGYHHRTEMNKKIYR 596
           LH  +  F   R  +K Y    E  +K+Y+
Sbjct: 22  LHNEKEKFLEERTSRKRYSRSREREQKLYK 51


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 507 LHPSRVSFTVARAGQKGYHHRTEMNKKIYR 596
           LH  +  F   R  +K Y    E  +K+Y+
Sbjct: 22  LHNEKEKFLEERTSRKRYSRSREREQKLYK 51


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 507 LHPSRVSFTVARAGQKGYHHRTEMNKKIYR 596
           LH  +  F   R  +K Y    E  +K+Y+
Sbjct: 22  LHNEKEKFLEERTSRKRYSRSREREQKLYK 51


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 507 LHPSRVSFTVARAGQKGYHHRTEMNKKIYR 596
           LH  +  F   R  +K Y    E  +K+Y+
Sbjct: 22  LHNEKEKFLEERTSRKRYSRSREREQKLYK 51


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 507 LHPSRVSFTVARAGQKGYHHRTEMNKKIYR 596
           LH  +  F   R  +K Y    E  +K+Y+
Sbjct: 22  LHNEKEKFLEERTSRKRYSRSREREQKLYK 51


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 507 LHPSRVSFTVARAGQKGYHHRTEMNKKIYR 596
           LH  +  F   R  +K Y    E  +K+Y+
Sbjct: 22  LHNEKEKFLEERTSRKRYSRSREREQKLYK 51


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 507 LHPSRVSFTVARAGQKGYHHRTEMNKKIYR 596
           LH  +  F   R  +K Y    E  +K+Y+
Sbjct: 22  LHNEKEKFLEERTSRKRYSRSREREQKLYK 51


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 507 LHPSRVSFTVARAGQKGYHHRTEMNKKIYR 596
           LH  +  F   R  +K Y    E  +K+Y+
Sbjct: 22  LHNEKEKFLEERTSRKRYSRSREREQKLYK 51


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 507 LHPSRVSFTVARAGQKGYHHRTEMNKKIYR 596
           LH  +  F   R  +K Y    E  +K+Y+
Sbjct: 22  LHNEKEKFLEERTSRKRYSRSREREQKLYK 51


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 507 LHPSRVSFTVARAGQKGYHHRTEMNKKIYR 596
           LH  +  F   R  +K Y    E  +K+Y+
Sbjct: 22  LHNEKEKFLEERTSRKRYSRSREREQKLYK 51


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 507 LHPSRVSFTVARAGQKGYHHRTEMNKKIYR 596
           LH  +  F   R  +K Y    E  +K+Y+
Sbjct: 255 LHNEKEKFLEERTSRKRYSRSREREQKLYK 284


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 507 LHPSRVSFTVARAGQKGYHHRTEMNKKIYR 596
           LH  +  F   R  +K Y    E  +K+Y+
Sbjct: 255 LHNEKEKFLEERTSRKRYSRSREREQKLYK 284


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 657 SSRCIVFNNFAILFVEF 607
           S  CIVFN+  IL V F
Sbjct: 136 SVECIVFNSGTILCVPF 152


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 165 PSSSCHFLLALVKAFFLHL 109
           P+ S H+LLAL+   F  L
Sbjct: 43  PNPSLHYLLALLYILFTFL 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,875
Number of Sequences: 438
Number of extensions: 4971
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)