Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30531
         (784 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi...   101   4e-22
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi...   101   4e-22
At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi...   100   9e-22
At1g22360.1 68414.m02797 UDP-glucoronosyl/UDP-glucosyl transfera...    32   0.37 
At1g77420.1 68414.m09016 hydrolase, alpha/beta fold family prote...    30   1.5  
At4g16940.1 68417.m02555 disease resistance protein (TIR-NBS-LRR...    29   3.5  
At5g05890.1 68418.m00649 UDP-glucoronosyl/UDP-glucosyl transfera...    29   4.6  
At1g22340.1 68414.m02795 UDP-glucoronosyl/UDP-glucosyl transfera...    28   6.1  
At1g22370.2 68414.m09509 UDP-glucoronosyl/UDP-glucosyl transfera...    28   8.0  
At1g22370.1 68414.m09508 UDP-glucoronosyl/UDP-glucosyl transfera...    28   8.0  

>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  101 bits (243), Expect = 4e-22
 Identities = 47/83 (56%), Positives = 58/83 (69%)
 Frame = +1

Query: 259 RQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXS 438
           +QKKAH+MEIQ+NGGTI  KV +A    EK IP+++VF +DEMID I            +
Sbjct: 175 KQKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVT 234

Query: 439 RWHTKKLPRKTHKGLRKVACIGA 507
           RW   +LPRKTH+GLRKVACIGA
Sbjct: 235 RWGVTRLPRKTHRGLRKVACIGA 257



 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 40/90 (44%), Positives = 59/90 (65%)
 Frame = +2

Query: 2   GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 181
           GVV Y++TP GLR+L TVWA+H+SE+ RRRFYKNW              +  E G+K I+
Sbjct: 88  GVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWAKSKKKAFTGYAKQYDSEDGKKGIQ 147

Query: 182 KDFKKMIRYCSVVRVIAHTQMKLLNSDKRR 271
              +KM +Y +V+RV+AHTQ++ +   K++
Sbjct: 148 AQLEKMKKYATVIRVLAHTQIRKMKGLKQK 177



 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 26/32 (81%), Positives = 31/32 (96%)
 Frame = +3

Query: 510 HPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQ 605
           HP+RVS+TVARAGQ GYHHRTE+NKKIYR+G+
Sbjct: 259 HPARVSYTVARAGQNGYHHRTELNKKIYRLGK 290


>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  101 bits (243), Expect = 4e-22
 Identities = 47/83 (56%), Positives = 58/83 (69%)
 Frame = +1

Query: 259 RQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXS 438
           +QKKAH+MEIQ+NGGTI  KV +A    EK IP+++VF +DEMID I            +
Sbjct: 175 KQKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVT 234

Query: 439 RWHTKKLPRKTHKGLRKVACIGA 507
           RW   +LPRKTH+GLRKVACIGA
Sbjct: 235 RWGVTRLPRKTHRGLRKVACIGA 257



 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 40/90 (44%), Positives = 59/90 (65%)
 Frame = +2

Query: 2   GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 181
           GVV Y++TP GLR+L TVWA+H+SE+ RRRFYKNW              +  E G+K I+
Sbjct: 88  GVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWAKSKKKAFTGYAKQYDSEDGKKGIQ 147

Query: 182 KDFKKMIRYCSVVRVIAHTQMKLLNSDKRR 271
              +KM +Y +V+RV+AHTQ++ +   K++
Sbjct: 148 AQLEKMKKYATVIRVLAHTQIRKMKGLKQK 177



 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 26/32 (81%), Positives = 31/32 (96%)
 Frame = +3

Query: 510 HPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQ 605
           HP+RVS+TVARAGQ GYHHRTE+NKKIYR+G+
Sbjct: 259 HPARVSYTVARAGQNGYHHRTELNKKIYRLGK 290


>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
           to ribosomal protein GI:806279 from [Arabidopsis
           thaliana]
          Length = 390

 Score =  100 bits (240), Expect = 9e-22
 Identities = 43/90 (47%), Positives = 61/90 (67%)
 Frame = +2

Query: 2   GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 181
           GVVGY++TP GLR+L TVWA+H+SE+ RRRFYKNW               + E G+K I+
Sbjct: 88  GVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYKNWAKSKKKAFTRYSKKHETEEGKKDIQ 147

Query: 182 KDFKKMIRYCSVVRVIAHTQMKLLNSDKRR 271
              +KM +YCSV+RV+AHTQ++ +   K++
Sbjct: 148 SQLEKMKKYCSVIRVLAHTQIRKMKGLKQK 177



 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 45/83 (54%), Positives = 56/83 (67%)
 Frame = +1

Query: 259 RQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXS 438
           +QKKAH+ EIQ+NGG I  KV +A    EK +PVD++F +DEMID I            +
Sbjct: 175 KQKKAHLNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVT 234

Query: 439 RWHTKKLPRKTHKGLRKVACIGA 507
           RW   +LPRKTH+GLRKVACIGA
Sbjct: 235 RWGVTRLPRKTHRGLRKVACIGA 257



 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 26/32 (81%), Positives = 31/32 (96%)
 Frame = +3

Query: 510 HPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQ 605
           HP+RVS+TVARAGQ GYHHRTEMNKK+YR+G+
Sbjct: 259 HPARVSYTVARAGQNGYHHRTEMNKKVYRVGK 290


>At1g22360.1 68414.m02797 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 481

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +1

Query: 673 EKFHLHP-IGRVSPHYGWKVNQRAFCGLIPRVCLP 774
           EK   HP IG    H GW     + CG +P VC P
Sbjct: 363 EKVLSHPAIGGFLTHCGWNSTLESLCGGVPMVCWP 397


>At1g77420.1 68414.m09016 hydrolase, alpha/beta fold family protein
           similar to monoglyceride lipase from [Homo sapiens]
           GI:14594904, [Mus musculus] GI:2632162; contains Pfam
           profile PF00561: hydrolase, alpha/beta fold family
          Length = 382

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -2

Query: 378 LGKHRIDRDRFLQMFSGPFHFVLDGTT 298
           L KH + +D+ L+++ G +H +L+G T
Sbjct: 334 LHKHAVSQDKTLKLYPGGYHCILEGDT 360


>At4g16940.1 68417.m02555 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1103

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = +3

Query: 411  GQRIQRCHFSLAHKEATP*DTQGS*ESCLHWSLHPSRVSFTVARAGQKGYHHRTEMNKKI 590
            G R++RC   L +   +P D++GS E+          V+    ++G+K     TE +KK 
Sbjct: 973  GTRVKRCGIRLLNVSTSPDDSEGSSETESPDDSDGDSVTEYHQQSGEKCDDVETESSKKR 1032

Query: 591  YRIGQGIPQK 620
             R+  G  +K
Sbjct: 1033 MRMTLGNSEK 1042


>At5g05890.1 68418.m00649 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 455

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 694 IGRVSPHYGWKVNQRAFCGLIPRVCLP 774
           IG    H GW     + C  +P +CLP
Sbjct: 347 IGGFLTHNGWSSTVESVCEAVPMICLP 373


>At1g22340.1 68414.m02795 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase; similar
           to UDP-glucose glucosyltransferase GI:3928543 from
           [Arabidopsis thaliana]
          Length = 487

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = +1

Query: 673 EKFHLHP-IGRVSPHYGWKVNQRAFCGLIPRVCLP 774
           EK   HP IG    H GW     +  G +P +C P
Sbjct: 367 EKVLSHPAIGGFLTHCGWNSTLESLAGGVPMICWP 401


>At1g22370.2 68414.m09509 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein glycosyltransferase family
          Length = 479

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = +1

Query: 673 EKFHLHP-IGRVSPHYGWKVNQRAFCGLIPRVCLP 774
           EK   HP +G    H GW     +  G +P VC P
Sbjct: 361 EKVLSHPAVGGFLTHSGWNSTLESLSGGVPMVCWP 395


>At1g22370.1 68414.m09508 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein glycosyltransferase family
          Length = 309

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = +1

Query: 673 EKFHLHP-IGRVSPHYGWKVNQRAFCGLIPRVCLP 774
           EK   HP +G    H GW     +  G +P VC P
Sbjct: 191 EKVLSHPAVGGFLTHSGWNSTLESLSGGVPMVCWP 225


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,699,492
Number of Sequences: 28952
Number of extensions: 402446
Number of successful extensions: 1060
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)